0
votes
1
reply
2.1k
views
extdata missing for non-human OmicCircos plots?
OmicCircos
updated 10.9 years ago by ▴ 50 • written 11.3 years ago by • 0
0
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1
reply
1.5k
views
Connecting with Stack Exchange account?
meta
10.9 years ago Charles Determan Jr ▴ 140
2
votes
2
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8.5k
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biocLite() fails to update packages when main library not writable
bioclite package updates
updated 10.9 years ago by ★ 8.2k • written 10.9 years ago by ★ 2.0k
2
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7
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Is there a way to find corresponding svn revision for the current /devel/src/contrib/PACKAGES and /release?
svn PACKAGES
updated 10.9 years ago by ★ 8.2k • written 10.9 years ago by • 0
0
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2
replies
2.1k
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Possible Data integration of molecular data(transcriptomic) and imaging data from the same patients in R
data integration microarray bioconductor affymetrix biomarkers
updated 10.9 years ago by ★ 13k • written 10.9 years ago by ▴ 840
4
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2.6k
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treatDGE vs glmLRT
edger
updated 10.9 years ago by 68k • written 10.9 years ago by ▴ 10
0
votes
1
reply
2.1k
views
Error message suggestion for fullCoverage in derfinder
derfinder
updated 10.9 years ago by ★ 1.1k • written 11.0 years ago by ▴ 40
1
vote
10
replies
3.2k
views
derfinder failing in mergeResults()
derfinder
updated 10.9 years ago by ★ 1.1k • written 11.1 years ago by ▴ 40
0
votes
1
reply
3.1k
views
Problem in the beginning
affy
10.9 years ago zillurbmb51 • 0
0
votes
0
replies
1.7k
views
Re: FlowStats help
flowclust opencyto flowcytometry
10.9 years ago Jiang, Mike ★ 1.3k
0
votes
0
replies
1.3k
views
riboSeqR: questions on plotTranscript function
riboseqr
10.9 years ago antonvila.s • 0
3
votes
4
replies
1.9k
views
problem with getting a subset of alignments mapping to a GRange using readGAlignmentsFromBam
genomicalignments scanbamparam
updated 10.9 years ago by 68k • written 10.9 years ago by ▴ 10
1
vote
1
reply
3.4k
views
Factorial Design with DESeq2; contrast problem.
deseq2 multiple factor design complex-design
updated 10.9 years ago by 43k • written 10.9 years ago by • 0
0
votes
4
replies
3.4k
views
Error using Bsmooth.tstat due to NAs
Coverage bsseq
updated 2.3 years ago by • 0 • written 11.4 years ago by ★ 13k
1
vote
3
replies
3.3k
views
edgeR for DEG between two groups
edgeR
10.9 years ago zhouxiuqing • 0
1
vote
1
reply
1.7k
views
Performing findOverlaps when both subject and query are on the order of a million
findoverlaps
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 30
0
votes
2
replies
929
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Copy of Course Certificate
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written 10.9 years ago by • 0
2
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3
replies
2.1k
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Need advice on normalization of SMART-amplified RNA-Seq data
normalization rna-seq deseq2 edger smart
updated 10.9 years ago by ★ 7.9k • written 10.9 years ago by ▴ 270
3
votes
3
replies
8.1k
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Find DEG from RNA-seq: What if have only RPKM data?
deg rna-seq rpkm
updated 10.9 years ago by ▴ 370 • written 10.9 years ago by • 0
1
vote
7
replies
7.2k
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DESeq2 with unbalanced experimental design
deseq2
updated 15 months ago by • 0 • written 10.9 years ago by • 0
7
votes
10
replies
6.6k
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Time course RNA-Seq using edgeR
edger
updated 10.9 years ago by 53k • written 10.9 years ago by • 0
0
votes
1
reply
2.0k
views
Error attaching GO.db package
GO.db loadnamespace annotation chippeakanno
updated 10.9 years ago by ★ 8.2k • written 10.9 years ago by ▴ 10
2
votes
1
reply
2.7k
views
Change the start of GenomicRanges list
genomicranges
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 90
2
votes
2
replies
1.5k
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timeLinePlot() ylab parameter doesn't work?
flowviz flowcore
updated 10.9 years ago by ★ 1.3k • written 10.9 years ago by ▴ 20
0
votes
0
replies
1.7k
views
News: system maintenance / downtime Wed March 11
news News
10.9 years ago Dan Tenenbaum ★ 8.2k
3
votes
3
replies
1.5k
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Accessing old download statistics
bioconductor download
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 20
6
votes
5
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4.6k
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DESeq2: which normalized data matrix should I take?
deseq2
10.9 years ago Xiaokuan Wei ▴ 230
0
votes
2
replies
1.5k
views
difficulty in mapping gene names to probes coordinates in a celfile
microarray probe
updated 10.9 years ago by 68k • written 10.9 years ago by • 0
0
votes
1
reply
1.3k
views
Gviz: DataTrack generating non-user data points?
gviz r
updated 10.9 years ago by ★ 1.6k • written 10.9 years ago by • 0
0
votes
1
reply
1.8k
views
NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm copynumber
10.9 years ago kforner • 0
2
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1
reply
1.8k
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rhdf5 segmentation error with vdata
rhdf5
updated 10.9 years ago by ▴ 550 • written 10.9 years ago by • 0
4
votes
2
replies
1.3k
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Creating all possible k combinations of n objects with a constraint for large n
base
10.9 years ago mrk.carty ▴ 30
3
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5
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2.5k
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help! new to R! Detection p value cut off
p values microarray FDR
10.9 years ago a • 0
0
votes
2
replies
1.8k
views
camera.DGEList causes Error in qr.qty(QR, t(y)) : NA/NaN/Inf in foreign function call
edgeR
updated 10.9 years ago by ★ 29k • written 10.9 years ago by ▴ 830
2
votes
4
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6.9k
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T-test for microarray data
limma microarray t.test
updated 10.9 years ago by 25k • written 10.9 years ago by • 0
1
vote
4
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4.1k
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GeneChip Human Transcriptome Array 2.0 analysis in R for identifying possible differential exon splicing events
affymetrixchip GenechipHumanTranscriptomeArray2.0 exon array analysis
10.9 years ago svlachavas ▴ 840
0
votes
2
replies
2.2k
views
Affymetrix file with probe set id
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updated 10.9 years ago by • 0 • written 21.3 years ago by ▴ 600
18
votes
17
replies
5.7k
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How to model a comparison between comparisons in edgeR?
edger rnaseq
updated 10.9 years ago by ★ 7.9k • written 10.9 years ago by ▴ 60
2
votes
5
replies
2.9k
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convert GAlignmentPairs to GAlignment
GAlignmentPairs galp2gal RIPSeeker
10.9 years ago tomas.bjorklund ▴ 20
0
votes
0
replies
1.9k
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News: 4 days left to register for a short course on computational proteomics
proteomics news course massspectrometry News
10.9 years ago Olga Vitek ▴ 40
0
votes
5
replies
3.7k
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Problem Importing STAR fusion data into chimera
fusion genes chimera star
updated 10.9 years ago by • 0 • written 11.2 years ago by • 0
0
votes
1
reply
5.3k
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methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 10.9 years ago by ▴ 80 • written 10.9 years ago by ▴ 370
0
votes
3
replies
2.2k
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Genes corresponding to GO terms for unsupported organsims
gostats unsupported organisms
updated 10.9 years ago by ★ 7.2k • written 10.9 years ago by ▴ 270
0
votes
4
replies
2.1k
views
Problems loading deepSNV and associated libraries in bioconductor
deepsnv
updated 10.9 years ago by ★ 6.8k • written 10.9 years ago by • 0
0
votes
0
replies
2.6k
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Job: Abbvie -- Senior Manager/Associate Director, Exploratory Statistics
genomics genetics proteomics rnaseq microarray Job
10.9 years ago Feng Hong • 0
0
votes
3
replies
3.3k
views
filtering out probes with no gene symbol from expressionSet
probe filter subset gene symbol affy
10.9 years ago alakatos ▴ 130
0
votes
5
replies
2.6k
views
Error installing VariantAnnotation with bioconductor/devel_core
install variantannotation
10.9 years ago kforner • 0
3
votes
4
replies
1.7k
views
Problem with scanBam
scanBam scanbamparam
updated 10.9 years ago by 25k • written 10.9 years ago by ▴ 150
0
votes
1
reply
1.7k
views
News: Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course RNA-Seq Chip-seq Parallel News
10.9 years ago Martin Morgan 25k
4
votes
1
reply
3.3k
views
OFFICIAL_GENE_SYMBOL not an available idType in RDAVIDWebService
rdavidwebservice
updated 10.9 years ago by 68k • written 10.9 years ago by ▴ 30
46,735 results • Page 467 of 935
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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
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Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
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I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
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As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
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