18 months ago
shepherl
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751
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updated 6.4 years ago by
flipdiving2017
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written 6.4 years ago by
shepherl
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3.2 years ago • updated 3.0 years ago
mchakiachvili
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3.4 years ago • updated 3.0 years ago
shepherl
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updated 9.1 years ago by
Ou, Jianhong
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written 9.1 years ago by
Julie Zhu
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2.5 years ago • updated 15 months ago
Wolfgang Huber
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updated 9.0 years ago by
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written 9.0 years ago by
laianavarromartin
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865
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12 months ago • updated 11 months ago
shepherl
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8.9 years ago
Dan Tenenbaum
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8.2k
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1.4k
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updated 5.2 years ago by
Julie Zhu
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written 5.2 years ago by
Levi Waldron
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1.1k
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8
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updated 5.4 years ago by
Gordon Smyth
50k
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written 5.7 years ago by
Steve Pederson
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170
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2.7k
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updated 8.8 years ago by
Sonali Arora
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390
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written 8.8 years ago by
Thomas Maurel
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800
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862
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News:
Ensembl 93 is out!
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votes
1
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699
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7.6 years ago
Martin Morgan
25k
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946
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3.5 years ago
kayla.interdonato
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5.6 years ago
laurent.albou
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7.6 years ago
Thomas Maurel
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800
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949
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3.7 years ago
mchakiachvili
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9.6 years ago
Greg Finak
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150
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937
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5.6 years ago
shepherl
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993
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8.0 years ago
Dan Tenenbaum
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8.2k
3
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700
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News:
Service problems noted
updated 2.6 years ago by
shepherl
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written 2.6 years ago by
Vincent J. Carey, Jr.
6.7k
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276
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0
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1
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256
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1
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301
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updated 6 weeks ago by
howell
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written 10 weeks ago by
Maria Doyle
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70
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1.4k
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News:
OrgDbs in AnnotationHub
6.5 years ago
shepherl
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877
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5
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1.7k
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8.8 years ago
Sean Davis
21k
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801
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2.1 years ago • updated 2.0 years ago
kayla.interdonato
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742
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2.2k
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updated 3.2 years ago by
aedin
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written 3.3 years ago by
Matthew Ritchie
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1000
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985
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6.0 years ago
shepherl
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2
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1
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1.4k
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0
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1
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724
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written 2.0 years ago by
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3.8k
1
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581
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18 months ago
Maria Doyle
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70
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706
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written 16 months ago by
shepherl
3.8k
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1.1k
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0
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2.0k
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0
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1
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1.5k
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updated 9 months ago by
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41k
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written 9 months ago by
Benjamin
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30
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307
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written 3 months ago by
shepherl
3.8k
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1.4k
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updated 9.5 years ago by
orkanilbay
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written 9.5 years ago by
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4.3k
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1.0k
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0
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1.1k
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1.2k
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8.2 years ago
Dan Tenenbaum
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Comment: Differences in differential analysis methods for RNA-Seq
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ATpoint
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MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
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Thank for your response. It is Illumina 450 K. I use this code
```{r }
library(IlluminaHumanMethylation450kanno.ilmn12.hg19)
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I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
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But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed):
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limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
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Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
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