Showing : Bioinformatics • reset
4
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seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
bioinformatics paper multiple treatments biologicalreplicates
updated 7.8 years ago by 50k • written 7.8 years ago by ▴ 80
3
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0
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1.5k
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Job: PhD Positions in Computational Cancer Research
jobs bioinformatics biostatistics cancer next-generation sequencing Job
8.0 years ago Bernd Fischer ▴ 550
3
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4
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981
views
edgeR analysis of cells treated with either drug1, drug2, or a time matched control at two different time points, did I set this up correctly?
edger rnaseq gene expression bioinformatics
updated 5.7 years ago by 50k • written 5.7 years ago by • 0
3
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7
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2.5k
views
How to convert bia file to tsv file
samtools bioinformatics
9.0 years ago • updated 8.9 years ago engr.yahya602 • 0
3
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6
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1.9k
views
Analyzing Open source PPI databases
ppi bioinformatics
updated 8.7 years ago by 25k • written 8.7 years ago by ▴ 10
3
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6
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1.9k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 7.0 years ago by 65k • written 7.0 years ago by ▴ 20
3
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8
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1.8k
views
Problem with readFast5Summary in IONiseR related to HDF5
ioniser bioinformatics minion
updated 6.6 years ago by ▴ 380 • written 7.1 years ago by • 0
2
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4
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3.8k
views
How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 11 weeks ago by 50k • written 4.8 years ago by • 0
2
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2
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973
views
Help for Research Proposal
drug development pathways bioinformatics
updated 5.4 years ago by ★ 13k • written 5.4 years ago by • 0
2
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2
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1.2k
views
How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
2.2 years ago Hasan Alanya • 0
2
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0
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859
views
Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
3.6 years ago Johannes Rainer ★ 2.0k
2
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5
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1.6k
views
Differential Gene Expression
deseq2 bioinformatics rna-seq Tutorial
updated 7.6 years ago by 41k • written 7.6 years ago by ▴ 10
1
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0
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1.1k
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Job: Chief Data Scientist
bioinformatics Job
7.5 years ago kaufmanm ▴ 10
1
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2
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958
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Results Goana after edgeR pipeline
EdgeR Bioinformatics Goana
2.7 years ago Barista • 0
1
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0
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1.2k
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Job: Bioinformatician/Bioinformatics position, IMB Mainz, Germany
bioinformatics germany job Job
7.5 years ago sergisayolspuig ▴ 80
1
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0
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1.3k
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Job: Bioinformatician/Bioinformatics position, IMB Mainz, Germany
bioinformatics job germany
2.4 years ago sergisayolspuig ▴ 80
1
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0
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764
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
21 months ago Andy Lynch ▴ 120
1
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0
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1.3k
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Job: FIMM-EMBL International PhD program now accepting applications
bioinformatics molecular medicine PhD Job
7.3 years ago gretchen.repasky ▴ 20
1
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6
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2.8k
views
DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 14 months ago by 41k • written 5.4 years ago by • 0
1
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0
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932
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Job: Bioinformatics Analyst II, Genomics Shared Resource - Fred Hutchinson Cancer Research Center, Seattle, WA
bioinformatics seattle full-time genomics Job
4.5 years ago Fred Hutch (Recruiting) ▴ 40
1
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0
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953
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Job: PhD Positions in Data Science and Bioinformatics at the German Cancer Research Center (DKFZ) in Heidelberg
data science bioinformatics PhD doctoral position Job
5.1 years ago DKFZ International PhD Program ▴ 10
1
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0
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895
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
3.9 years ago Fred Hutch (Recruiting) ▴ 40
1
vote
0
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741
views
Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
2.0 years ago DKFZ International PhD Program ▴ 10
1
vote
0
replies
1.7k
views
Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
8.5 years ago Yassen Assenov ▴ 10
1
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1
reply
1.2k
views
News: Gene Ontology Official Workshop - Montreal, October 16, 2018
gene ontology go ontology bioinformatics genomics News
5.6 years ago laurent.albou • 0
1
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0
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1.3k
views
Job: Bioinformatician/Bioinformatics position, IMB Mainz, Germany
job bioinformatics germany Job
6.5 years ago sergisayolspuig ▴ 80
1
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2
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2.5k
views
topGO for Gene Ontology and Gene Set enrichment
topgo gene ontology gene set enrichment rna-seq bioinformatics
updated 7.3 years ago by ▴ 730 • written 7.6 years ago by ▴ 10
1
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1
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5.5k
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Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz clustering bioinformatics proteomics timecourse
updated 8.2 years ago by 1.6k • written 8.2 years ago by • 0
1
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2
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1.4k
views
How do i perform chi square test in r?
microarray chisquare bioconductor bioinformatics
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 10
1
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0
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1.6k
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Job: Job Opening: Computational Biologists in Cambridge, MA and NYC
ngs computational biology R genomics bioinformatics Job
8.5 years ago mmartin ▴ 20
1
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0
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1.2k
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Job: Applications are now invited for the FIMM-EMBL International PhD program
bioinformatics data science PhD Job
6.3 years ago gretchen.repasky ▴ 20
1
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5
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3.2k
views
How to convert a bam file into tsv file format?
bioinformatics
updated 8.6 years ago by 50k • written 8.6 years ago by • 0
1
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1
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1.3k
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Job: Post-doctoral mass spectrometry and proteomics bioinformatician (updated)
bioinformatics proteomics mass spectrometry job Job
6.9 years ago • updated 6.8 years ago Laurent Gatto 1.6k
1
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0
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1.7k
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Job: Call for Professors and Assistant Professors
bioinformatics computational biology Job
6.7 years ago aaistaustria ▴ 10
1
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2
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2.3k
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Job: Postdoctoral Research Fellow in Bioinformatics – Systems Biology of Childhood Cancer
bioinformatics systemsbiology cancer job austria Job
8.9 years ago • updated 8.7 years ago heinrich.kovar ▴ 10
1
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1
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1.7k
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News: New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology bioinformatics teaching master News
updated 7.8 years ago by • 0 • written 7.9 years ago by ▴ 10
1
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0
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745
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Job: Sr. Bioinformatics Scientist
job bioinformatics Job
4.9 years ago shira.rockowitz ▴ 10
1
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3
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2.1k
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Gene Ontology and Gene Set Enrichment
rna-seq bioinformatics gene ontology gene set enrichment go
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by ▴ 10
1
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0
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1.1k
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Job: Bioinformatics Position: Francis Crick Institute, London
job bioinformatics uk Job
7.0 years ago Gavin Kelly ▴ 680
1
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0
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1.1k
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Job: Bioinformatician/Bioinformatics position, IMB Mainz, Germany
job bioinformatics germany Job
6.6 years ago sergisayolspuig ▴ 80
1
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1
reply
1.2k
views
FPKM normalization questions!
r fpkm bioinformatics
updated 7.6 years ago by ★ 28k • written 7.6 years ago by ▴ 10
1
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2
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1.3k
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Not many DE genes using glmTreat
EdgeR Bioinformatics Transcriptomics Quantseq
2.7 years ago Barista • 0
0
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0
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1.4k
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Job: Senior Postdoctoral Fellow in Computational Biology/Bioinformatics : Adelaide, Australia
postdoc bioinformatics network analysis australia systemsbiology Job
8.0 years ago david.lynn • 0
0
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0
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1.6k
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Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
8.2 years ago Hui Sun Leong ▴ 10
0
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2
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2.4k
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Job: Bioinformatics Research Associate, University of Adelaide
job Job australia bioinformatician job bioinformatics
written 8.9 years ago by ▴ 170
0
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0
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2.2k
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Job: PhD Positions in Helsinki
bioinformatics job Helsinki Finland Job
8.2 years ago Simon Anders ★ 3.7k
0
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0
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2.4k
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Job: Full position as Bioinformatician at ETH Zurich in Personalized Medicine Data Fusion and Method Implementation
bioinformatics personalized medicine genomics Job
9.6 years ago Daniel Stekhoven ▴ 10
0
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3
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1.5k
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How to extract / pull out each row(a.k.a, single genome interval ) from given bed files by row by row for meta analysis?
r bioinformatics peakset
updated 13 months ago by • 0 • written 8.3 years ago by ▴ 80
0
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0
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2.0k
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Job: Postdocs and PhD students in the areas of Bioinformatics, Biostatistics or Medical Informatics
jobs job bioinformatics R Job
8.4 years ago Frank Kramer ▴ 60
0
votes
2
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2.5k
views
Error in CummeRbund installation
cummerbund rnaseq bioinformatics bioconductor R
updated 9.0 years ago by 65k • written 9.0 years ago by • 0
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea() by James W. MacDonald 65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea() by Chris • 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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