Showing : annotation • reset
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2.0k
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How to get the order of the gene list and indivdual cluster from the big heatmap made by heatmap2.0?
annotation heatmap
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
0
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0
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1.1k
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How to run my own data using SGSeq?
annotation sgseq
updated 6.8 years ago by 4.2k • written 6.8 years ago by • 0
0
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1
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1.5k
views
MCLUST: finding the best number of Gaussian components to fit my data
software error microarray probe annotation
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
1
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2
replies
775
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How to find the expression values of genes matched by multiple probes in 2-channel microarray?
microarray annotation
updated 6.8 years ago by 53k • written 6.8 years ago by ▴ 20
4
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4
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4.1k
views
Retrieve canonical transcript for each gene via ensembldb R package
annotation ensembldb
updated 3.3 years ago by ▴ 40 • written 6.8 years ago by • 0
4
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4
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2.8k
views
Matching GenBank Accession Number with corresponding Biomart results
annotation biomaRt r
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
3
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13
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4.0k
views
Rsubread- feature counts
annotation Rsubread featureCounts
updated 6.8 years ago by 53k • written 6.8 years ago by • 0
0
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0
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989
views
unwanted linebreaks using write.table with a dataframe created via the myvariant.info r package
annotation software error myvariant
updated 6.8 years ago by 4.2k • written 6.8 years ago by • 0
1
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2
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897
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Request to create an organism package
annotation deseq2
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
0
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0
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945
views
kegg enrichment using clusterProfiler could not provide gene name
annotation
6.8 years ago huangzhiguang2016 • 0
0
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5
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2.5k
views
Error:no method for coercing this S4 class to a vector
annotation genomation
updated 6.8 years ago by ▴ 20 • written 6.8 years ago by • 0
1
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1
reply
2.2k
views
ChIPseeker genomicAnnotationPriority
annotation chipseeker
updated 4.3 years ago by • 0 • written 6.8 years ago by ▴ 10
3
votes
4
replies
1.9k
views
Different annotation obtained from hgu133a2.db and affymetrix annotation release
annotation hgu133plus2.db affymetrix microarrays micorarray
updated 6.9 years ago by 68k • written 6.9 years ago by ▴ 60
0
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5
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3.5k
views
mitochodria isCircular equals to FALSE in EnsDb.Hsapiens.v86 and EnsDb.Mmusculus.v79
R annotation ensembldb
7.0 years ago foehn ▴ 100
0
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2
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1.8k
views
Getting gene symbols with ensemble ids and mstrg ids
annotation
updated 7.0 years ago by 43k • written 7.0 years ago by • 0
0
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3
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782
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Question: Problem fetching resources from AnnotationHub, AH62557,error 403
annotation
updated 7.1 years ago by 4.2k • written 7.1 years ago by • 0
0
votes
5
replies
2.9k
views
Help for Affymetrix HTA 2.0 [transcript (gene) version] annotation
hta2.0 annotation transcripts
updated 7.1 years ago by ▴ 840 • written 7.1 years ago by • 0
3
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1
reply
2.2k
views
difference between pd.hugene.2.1.st and hugene21sttranscriptcluster.db
annotation microarray bioconductor pd.hugene.2.1.st hugene21sttranscriptcluster.db
updated 7.2 years ago by 68k • written 7.2 years ago by • 0
0
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3
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4.9k
views
Use probesets with highest baseline expression for differential gene
Annotation probe limma
13.7 years ago • updated 7.2 years ago Gordon Smyth 53k
0
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2
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1.2k
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Pulling Genbank Annotation Information via library(genbankr)
genbankr genbank annotation
7.2 years ago story.benjamin ▴ 20
1
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1
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3.1k
views
Extracting gene structures from a GFF3 file for use with annotateWithGeneParts()
genomicfeatures genomation genomicranges methylation annotation
updated 7.3 years ago by ▴ 20 • written 7.3 years ago by • 0
1
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1
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1.5k
views
biomaRt getBM() function does not recognize gene ID character vector values generated from csv file for annotation
biomart getBM() csv files annotation ensembl
updated 7.3 years ago by ★ 6.6k • written 7.3 years ago by ▴ 10
3
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1
reply
3.6k
views
How does GenomicFeature calculate 3'UTR?
genomicfeatures annotation utr
updated 7.4 years ago by 16k • written 7.4 years ago by • 0
3
votes
6
replies
4.2k
views
Problem with annotating ENSEMBLE IDs to GENE SYMBOL with AnnotationDBI mapIDs
annotation ensembl annotationdbi
7.4 years ago vd4mmind • 0
0
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1
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8.6k
views
convertId returning "attempt to select less than one element in integerOneIndex" Error
bioconductor annotation keggprofile
updated 7.4 years ago by 68k • written 7.4 years ago by • 0
0
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0
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1.9k
views
creating custom cdf file
annotation cdf
7.4 years ago obaloglu • 0
0
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2
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4.1k
views
lncRNA annotation for featureCouns and STAR
lncRNA featureCounts STAR annotation
updated 7.4 years ago by ★ 3.6k • written 7.4 years ago by ▴ 10
0
votes
1
reply
767
views
AnnotationHub instaltion probelm !
annotation
updated 7.4 years ago by 25k • written 7.4 years ago by • 0
0
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2
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3.9k
views
Add annotation color bar to ggplot
ggplot2 annotation
updated 7.6 years ago by ▴ 200 • written 7.6 years ago by ▴ 30
0
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1
reply
1.3k
views
Affy Mouse Annotation
annotation affymetrix
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
0
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0
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1.6k
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Probe annotations for ABI Human Genome Survey V2 microarray using Oracle
annotation probe microarray abi human genome survey v2 Oracle
7.6 years ago judemtaylor • 0
0
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3
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2.7k
views
How to handle multi-TSS genes in Repitools?
repitools promoter tss annotation
7.6 years ago Ryan C. Thompson ★ 7.9k
1
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3
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2.6k
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GO terms: Annotation for HumanMethylation450
Annotation GO probe Annotation GO probe
updated 7.7 years ago by • 0 • written 12.6 years ago by ▴ 970
2
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2
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1.1k
views
So many unmapped probes
annotation hugene10sttranscriptcluster.db annotation
written 7.7 years ago by ▴ 230
0
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2
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2.6k
views
Affymetrix Mogene 1 0 ST
Annotation Normalization affy Annotation Normalization affy
updated 7.7 years ago by • 0 • written 16.9 years ago by ▴ 30
0
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2
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2.0k
views
GOenrichmentAnalysis of WGCNA mocules in Zea mays
annotation wgcna package
7.7 years ago j.baldauf • 0
0
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1
reply
2.2k
views
tip_glom and annotations?
ggtree treeio phyloseq annotation tip_glom
updated 7.8 years ago by ★ 1.2k • written 7.8 years ago by • 0
7
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8
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2.9k
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Microarray analysis using RMA method using affy, limma
microarray annotation aureus affy
7.8 years ago neranjan007 • 0
1
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4
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1.9k
views
Using Human Protein Atlas annotations with pRoloc to interpretate subcellular location
pRoloc annotation subcellular location
updated 7.8 years ago by 1.6k • written 7.8 years ago by ▴ 20
0
votes
1
reply
932
views
ExpressionSet annotation with custom annotation file
annotation microarray R
7.8 years ago genesignature • 0
0
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1
reply
1.1k
views
Affy ClariomD human transcriptome annotation
affy annotation pd.clariom.d.human
updated 7.8 years ago by 68k • written 7.8 years ago by • 0
0
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2
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2.0k
views
Error in useMart while using a dataset in biomaRt
biomaRt bioconductor celegans annotation
updated 7.8 years ago by ★ 6.6k • written 7.8 years ago by • 0
1
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3
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1.7k
views
Different microarrays annotations provided by toTable and annotateEset functions
microarray annotation annotationdbi affycoretools annotationtools
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 70
1
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0
replies
1.6k
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News: Ensembl 91 EnsDb databases added to AnnotationHub
annotation ensembldb ensembl News
7.9 years ago Johannes Rainer ★ 2.1k
5
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0
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2.6k
views
News: edX online course introducing Bioconductor now up and running
annotation bioconductor News
updated 7.9 years ago by 25k • written 7.9 years ago by 6.7k
2
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2
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1.5k
views
How to add more columns to ReportingTools output?
reportingtools microarray annotation differential expression differential analysis
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
0
votes
11
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3.5k
views
Clariom D Assays, annotation
annotation
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
4
votes
0
replies
981
views
News: Map between protein and genome coordinates using ensembldb
ensembdb annotation News
7.9 years ago Johannes Rainer ★ 2.1k
3
votes
1
reply
1.4k
views
Gene missing in TxDb.Hsapiens.UCSC.hg19.knownGene
annotation
updated 7.9 years ago by ★ 3.4k • written 7.9 years ago by • 0
1
vote
1
reply
1.8k
views
How do I know which peak to analyze?
bioconductor annotation peaks
updated 8.0 years ago by 21k • written 8.0 years ago by ▴ 10
1,978 results • Page 6 of 40
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Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by James W. MacDonald 68k
Note that `S4Vectors` contains source code, so you will also need to [install RTools first][1]. [1]: https://cran.r-project.org/bin/win…
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Our windows binaries are currently lagging behind as we are currently do not have a windows builder. If you are on windows you can try ins…
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Can you please provide your `sessionInfo()` after doing `library("S4Vectors")`
Comment: VariantAnnotation does escape = within header string quotes by Daniel Cameron ▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data by Alexander • 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
Popular Question to Peter Hickey ▴ 760
Popular Question to edward.esiribloom • 0
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