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bioconductor
•
reset
0
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22
replies
3.1k
views
'x' has "out of limits" views ,Issue with the file size!! Compareequence function is not working
compilation error
filesize
bioconductor
6.7 years ago
susobhanbaidya
• 0
5
votes
22
replies
5.5k
views
sqliteSendQuery error in AnnotationForge bioconductor package
bioconductor
annotationforge
annotationdbi
annotation
r
updated 7.8 years ago by
Axel Klenk
★ 1.0k • written 9.2 years ago by
Stephen H
• 0
1
vote
22
replies
4.7k
views
problem with makeOrgPackageFromNCBI when making an annotation package
bioconductor
R
annotationforge
updated 7.4 years ago by
theobroma22
▴ 10 • written 7.8 years ago by
wssdandan2009
• 0
2
votes
20
replies
5.4k
views
Important r packages not available for R version 3.1.1
exonmap
exon array analysis
bioconductor
9.2 years ago
svlachavas
▴ 830
3
votes
18
replies
3.0k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 25 days ago
shepherl
3.9k
0
votes
18
replies
2.5k
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
written 3.2 years ago by
lea
• 0
6
votes
18
replies
3.3k
views
biomaRt - getBM - biomart= ENSEMBL_MART_FUNCGEN !!! NOT WORKING!!!
bioconductor
biomart
problem with connection
updated 7.9 years ago by
Dan Staines
▴ 70 • written 7.9 years ago by
juan-pablo.cerapio-arroyo
▴ 10
5
votes
18
replies
7.5k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 4 months ago by
picasa1983
• 0 • written 2.3 years ago by
Victor
• 0
0
votes
15
replies
2.0k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor
iranges
s4vectors
xvector
r 3.3.2
updated 5.8 years ago by
becker.gabriel
▴ 10 • written 5.8 years ago by
chokoiboko
• 0
3
votes
15
replies
2.7k
views
Are the p-values supposed to be on the order of 10^-120?
limma
affy
bioconductor
affymetrix
updated 9.6 years ago by
Gordon Smyth
50k • written 9.6 years ago by
mccallionc403
• 0
7
votes
15
replies
4.2k
views
Differentially expressed genes selection with FC and FDR cutoff
edgeR
rnaseq
r
bioconductor
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
Beginner
▴ 60
3
votes
14
replies
3.7k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart
error
ensembl
bioconductor
ensembl mart
6.9 years ago
daniel.carbajo
• 0
0
votes
14
replies
2.2k
views
Path to file in windows
bioconductor
R
windows
diffbind
updated 7.0 years ago by
Gord Brown
▴ 650 • written 7.1 years ago by
jorrenkuster
• 0
1
vote
13
replies
11k
views
unable to access index for repository
Bioconductor
ConsensusClusterPlus
updated 9 months ago by
Mehdi
• 0 • written 17 months ago by
k.wickstrom
• 0
1
vote
12
replies
5.5k
views
Install rtracklayer with the Error undefined symbol: OPENSSL_init_ssl (system Centos7.3 R3.5.1 openssl-1.1.1)
software error
rtracklayer
bioconductor
openssl
5.4 years ago
ruan_wei_dong
• 0
5
votes
12
replies
6.5k
views
Filtering step for differential analysis in edgeR
r
edger
differential gene expression
filtering
bioconductor
updated 6.0 years ago by
Gordon Smyth
50k • written 6.0 years ago by
Biologist
▴ 110
7
votes
12
replies
2.3k
views
Extract isoform-specific ranges
bioconductor
genomicranges
updated 6.7 years ago by
Malcolm Cook
★ 1.6k • written 6.7 years ago by
hwu12
▴ 10
2
votes
12
replies
2.9k
views
biomaRt does not return entrezgene id
bioconductor
biomart
entrez gene identifiers
ensembl
ensembl mart
updated 7.1 years ago by
Thomas Maurel
▴ 800 • written 7.1 years ago by
daniel.carbajo
• 0
4
votes
11
replies
1.7k
views
News:
Bioconductor 3.8 is released
bioconductor
news
release
News
updated 5.4 years ago by
restat110
• 0 • written 5.5 years ago by
Valerie Obenchain
★ 6.8k
2
votes
11
replies
952
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 3 months ago by
Guido Hooiveld
★ 3.9k • written 7 months ago by
cinzia.spagnoli
• 0
6
votes
11
replies
1.0k
views
Packages don't update, but no error or warning is thrown
Bioconductor
3 months ago • updated 12 weeks ago
gernophil
• 0
3
votes
11
replies
2.4k
views
Filtering Gene Symbols and Sample Description from GSE files of GEO
gene expression
geoquery
GSE
bioconductor
microarray
updated 5.7 years ago by
Sean Davis
21k • written 5.7 years ago by
mahm
▴ 20
3
votes
11
replies
3.5k
views
Filtering on present/absent calls methodology and perfect match only arrays
bioconductor
mas5
perfectmatch
affymetrixchip
filter
updated 9.2 years ago by
James W. MacDonald
65k • written 9.2 years ago by
svlachavas
▴ 830
0
votes
11
replies
3.7k
views
Missing data after BiomaRt query
biomart
bioconductor
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
elodie.chapeaublanc
• 0
7
votes
10
replies
1.7k
views
Possible TF binding site enrichment analysis through mroast and conversion problems
TF binding site analysis
bioconductor
mroast
limma
promoter analysis
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
svlachavas
▴ 830
6
votes
10
replies
4.8k
views
defining a function for multiple paired t.test in many rows of a microarray dataset
microarray
r
t.test
bioconductor
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
svlachavas
▴ 830
4
votes
10
replies
1.8k
views
Archives prior to 3.15 gone
archive
bioconductor
updated 6 months ago by
shepherl
3.9k • written 19 months ago by
Florian Finkernagel
▴ 30
4
votes
10
replies
9.1k
views
How can I extract sequences from a FASTA file for each of the intervals defined in a BED file using R?
R
bioconductor
granges
8.3 years ago • updated 7.9 years ago
pertille
• 0
3
votes
10
replies
2.3k
views
Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering
bioconductor
genesymbols
expressionset
9.2 years ago • updated 9.1 years ago
svlachavas
▴ 830
6
votes
10
replies
1.8k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing
roast
mroast
differential gene expression
bioconductor
9.0 years ago
svlachavas
▴ 830
2
votes
10
replies
3.3k
views
ChIPpeakAnno, MACS format annotation
bioconductor
ChIPpeakAnno
updated 5.3 years ago by
Julie Zhu
★ 4.3k • written 7.1 years ago by
Khademul Islam
▴ 30
2
votes
10
replies
6.1k
views
Install older specific version from an R package that is on the Bioconductor Repository
Bioconductor
biocLite
R packages
oldversion
8.5 years ago
svlachavas
▴ 830
4
votes
9
replies
3.3k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA
similarity
correlation
bioconductor
rnaseq
updated 7.3 years ago by
Peter Langfelder
★ 3.0k • written 7.3 years ago by
jol.espinoz
▴ 40
12
votes
9
replies
8.0k
views
Appropriate use of the function treat of the limma package
limma
treat
microarray
bioconductor
9.2 years ago
svlachavas
▴ 830
1
vote
9
replies
1.6k
views
IONiseR error when using the readFast5Summary function on nanopore data
ioniser
software error
bioconductor
7.6 years ago
mv340788
• 0
5
votes
9
replies
3.1k
views
Merge different datasets regarding a common number of DE genes in R
bioconductor
expresiondataset
affymetrixchip
differential gene expression
9.2 years ago
svlachavas
▴ 830
3
votes
9
replies
9.0k
views
merge fastq.gz in R? (or in Windows?)
rnaseq
bioconductor
fastq
updated 3.4 years ago by
Rafael
• 0 • written 8.8 years ago by
mk.applebee
• 0
2
votes
9
replies
1.3k
views
mas5calls function doesn't work; mirna40cdf problem
R
Bioconductor
mas5calls
updated 15 months ago by
James W. MacDonald
65k • written 15 months ago by
Berna
• 0
1
vote
8
replies
2.8k
views
Error in Champ for Bioconductor analyzing Methlayion array data
champ
bioconductor
contrastmatrix
compare.group
updated 5.3 years ago by
Yuan Tian
▴ 280 • written 5.3 years ago by
erinkello
• 0
2
votes
8
replies
1.7k
views
error in getting entrez ids for gene names
Bioconductor
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
gk13102603
• 0
4
votes
8
replies
3.9k
views
Is there a different way to generate a tree for phyloseq object
r
dada2
Bioconductor
updated 3.0 years ago by
Axel Klenk
★ 1.0k • written 3.0 years ago by
mschmidt
▴ 10
0
votes
8
replies
8.7k
views
Bioconductor version cannot be validated
BiocManager
Bioconductor
updated 5 months ago by
Marcel Ramos
690 • written 2.8 years ago by
charlotte
▴ 10
4
votes
8
replies
1.2k
views
Design Matrix for a paired experiment
bioconductor
edger
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
p_das
• 0
7
votes
8
replies
3.9k
views
Installing Bioconductor
Bioconductor
2.4 years ago
array chip
▴ 420
4
votes
8
replies
2.3k
views
ALL dataset, correct syntax using the exprs call?
ALL
bioconductor
biobase
exprs
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
detroit.drive
• 0
0
votes
8
replies
2.2k
views
Isoforms detection using bioconductor
bioconductor
biomart
granges
rna-seq
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
seungjoon.kim
• 0
3
votes
8
replies
26k
views
"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade
Rstudio
Bioconductor
R3.2.2
8.5 years ago
svlachavas
▴ 830
0
votes
8
replies
6.8k
views
not able to install bioconductor packages
package
bioconductor
new version
7.2 years ago
farahqureshi5
• 0
1
vote
8
replies
8.8k
views
"Subscript out of bounds" erorr during microarray analysis with Limma
oligo
limma
bioconductor
affymetrix microarrays
8.8 years ago
Claudia
▴ 10
1
vote
7
replies
5.4k
views
featureCounts creating fragments and high NoFeatures value
featurecounts
bioconductor
differential gene expression
star
updated 7.3 years ago by
Wei Shi
★ 3.6k • written 7.3 years ago by
gregory.l.stone
▴ 10
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Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
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