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how to use the flowCore spillover function
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updated 6.6 years ago by ▴ 310 • written 6.6 years ago by • 0
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Job: Data Manager - BC Cancer Research Center, Vancouver BC
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6.6 years ago jmaanaki • 0
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Job: Bioinformatics Scientist - BC Cancer Research Center, Vancouver, B
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6.6 years ago jmaanaki • 0
2
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812
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How to deregister from bioconducgtor
deregister
updated 6.6 years ago by ▴ 760 • written 6.6 years ago by • 0
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Batch Correction: DESeq2 Linear Model vs Batch-Correction-Specific Algorithms (RUV, ComBat, ect.)
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updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 40
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12
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RNA-Seq and edgeR: remarkable differences between cpms and fitted values
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updated 6.6 years ago by 53k • written 6.6 years ago by ▴ 90
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Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
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6.6 years ago morlenrp • 0
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updated 6.6 years ago by 43k • written 6.6 years ago by • 0
0
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631
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cn.mops and case control analysis
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6.6 years ago erika.salvi • 0
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Perform time course rna seq analysis at once with a single design or separate differential analysis for each time point
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updated 6.6 years ago by 43k • written 6.6 years ago by • 0
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Cannot down load the "org.Hs.eg.db" completely
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updated 6.6 years ago by 25k • written 6.6 years ago by • 0
2
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Is the data after variance stabilising transformation (blind = FALSE) already corrected for covariates?
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updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 20
0
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Is possible to use NOISeq with counts from RSubread?
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6.7 years ago Marcelo Laia ▴ 450
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BioMart : Error in getBM, the BioMart webservice returned an invalid result
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updated 6.7 years ago by ★ 6.6k • written 6.7 years ago by ▴ 20
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Need a BSgenome.Btaurus.UCSC.bostau9 package
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updated 6.7 years ago by 68k • written 6.7 years ago by • 0
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no vignettes directory error during BiocCheck checking [SOLVED]
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6.7 years ago waterincan • 0
2
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3
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Contrast for DESeq2 design with interaction and blocking factor
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6.7 years ago erwan.scaon ▴ 10
2
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News: BioCAsia, 5-6th December 2019, Sydney, Australia
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6.7 years ago Peter Hickey ▴ 760
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8
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How to use Rsamtool or GenomicAlignments to calculate RAN-seq read coverage curves
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updated 6.7 years ago by 16k • written 6.7 years ago by ▴ 90
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2.1k
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ROC curves using normalized sequencing data from 2 experiments
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6.7 years ago sebastian.lobentanzer ▴ 60
2
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3
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MSnbase extracting individual spectrum based on precursor ion m/z
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updated 6.7 years ago by 1.6k • written 6.7 years ago by ▴ 30
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Biostrings regex matching
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updated 6.7 years ago by 16k • written 6.7 years ago by ▴ 160
0
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0
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Incorporating factors of unwanted variation from RUVr into EdgeR cell means model for DE
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6.7 years ago garbuzov • 0
2
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8
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removing batch effect using DESeq and sva
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updated 6.7 years ago by 43k • written 6.7 years ago by ▴ 10
3
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GEO Download - "The query to BioMart webservice returned an invalid result..."
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updated 6.7 years ago by ★ 6.6k • written 6.7 years ago by ▴ 10
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How should I compare two different RNA-seq datasets using DESeq2 or EgdeR?
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updated 6.7 years ago by 43k • written 6.7 years ago by ▴ 10
0
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Differential abundance analysis of 16S data with extremely unbalanced cohorts in Deseq2
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updated 6.7 years ago by 43k • written 6.7 years ago by • 0
2
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Export annotation from GenomicInteractions package
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updated 6.7 years ago by ▴ 140 • written 6.7 years ago by • 0
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emptyDrops result is full NAs
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6.7 years ago hamza_karakurt ▴ 60
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Obtaining annotated results from rnbeads
rnbeads EPIC
updated 6.7 years ago by ▴ 50 • written 6.7 years ago by ★ 1.1k
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3
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cross-array comparison using limma fitted values
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updated 6.7 years ago by ★ 29k • written 6.7 years ago by ▴ 10
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Transcript biotypes downloaded from Biomart R package were not categorized same with Ensembl website
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6.7 years ago llmiao • 0
1
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Can't install the correct version of bioconductor, keeps using old version
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updated 6.7 years ago by 25k • written 6.7 years ago by • 0
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Importing transcript abundance datasets generated with Salmon 0.14.0
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updated 6.7 years ago by 43k • written 6.7 years ago by • 0
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How can I import KEGG annotations
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updated 6.7 years ago by 25k • written 6.7 years ago by • 0
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Does response on subset of data in DESeq
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updated 6.7 years ago by 43k • written 6.7 years ago by ★ 1.4k
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updated 6.7 years ago by ★ 2.1k • written 6.7 years ago by • 0
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Error in DBA_OLAP_RATE
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updated 6.7 years ago by ★ 5.2k • written 6.7 years ago by • 0
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Error in installing bioconductor
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updated 6.7 years ago by 25k • written 6.7 years ago by ▴ 10
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Same results with static and time course analysis respectively in EDGE
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6.7 years ago xgt1986627 • 0
1
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0
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Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
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6.8 years ago • updated 6.7 years ago Shamith.Samarajiwa ▴ 180
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chippeakanno annotation
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6.7 years ago yueli7 ▴ 20
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updated 6.7 years ago by ★ 1.4k • written 6.7 years ago by • 0
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News: List of Deprecated Packages Bioc 3.10
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6.7 years ago shepherl 4.3k
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Job: Sr. Bioinformatics Scientist
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6.7 years ago shira.rockowitz ▴ 10
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voomWithQualityWeights together with covariate in design matrix
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updated 6.7 years ago by ▴ 1000 • written 6.7 years ago by ▴ 90
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586
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Package for RNA-Chromatin Interaction Matrix for Differential Gene Feature Calling?
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updated 6.7 years ago by 43k • written 6.7 years ago by ▴ 10
0
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Error: row names supplied are of the wrong length in RUVSeq
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updated 6.7 years ago by ▴ 980 • written 6.8 years ago by • 0
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Is logFC a log2 fold change or some other base in scran::findMarkers
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updated 6.7 years ago by ★ 29k • written 6.7 years ago by • 0
0
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phyloseq to edgeR
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updated 6.7 years ago by 53k • written 6.7 years ago by ▴ 10
46,741 results • Page 209 of 935
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Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
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Comment: Are transformed values from rlog /vst log2 normalized counts?
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