2
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6
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1.9k
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mas5 normalization gives negative values
affy mas5
updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 40
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UniProt.ws version 2.10.2
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9.9 years ago DHS • 0
10
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14
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how DESeq calculates p-value ?
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updated 4.8 years ago by ▴ 20 • written 9.9 years ago by ▴ 30
4
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5
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CAGEr : problem while filtering the bamFile
CAGEr cage
updated 4.3 years ago by • 0 • written 9.9 years ago by ▴ 100
2
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3
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2.1k
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Is there an easy way to extend coverage to seqlengths and fill with zeroes?
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9.9 years ago liz.ingsimmons ▴ 140
0
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0
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Error with qa() in package ShortRead when checking for adapter contamination.
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9.9 years ago Diego Diez ▴ 760
4
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8
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13k
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how to use idat file for analyses in bioconductor
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updated 9.9 years ago by 53k • written 9.9 years ago by ▴ 10
1
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5
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About methylation data processing
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0
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2
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1.8k
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error running ChAMP vignette example
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9.9 years ago Hamid Bolouri ▴ 90
3
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1
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3.6k
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Calculating a p value by permutation analysis
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updated 9.9 years ago by 53k • written 9.9 years ago by ▴ 420
3
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6
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Affymetrix miRNA 4.0 Normalization and Analysis
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updated 4.7 years ago by ▴ 10 • written 9.9 years ago by ▴ 90
1
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2
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938
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reading a txt file as i need
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updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 40
0
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2
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1.5k
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puzzling ggbio behaviour when plotting a detail of a track
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updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 160
2
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13
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problem about (design matrix)
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updated 9.9 years ago by ★ 29k • written 9.9 years ago by • 0
1
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3
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4.4k
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HTSeq-count on several gff3/gtf files for use in DESeq2
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9.9 years ago Jon Bråte ▴ 270
7
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6
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2.7k
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Help to find Volunteer who can review my bioconductor package before submission ?
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9.9 years ago Jurat Shahidin ▴ 80
0
votes
1
reply
1.1k
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ctc in R 3.2.
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updated 9.9 years ago by ★ 29k • written 9.9 years ago by • 0
3
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7
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estimateCellCounts Visualisations - Adjusting Beta Values for Plotting
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updated 9.9 years ago by ▴ 20 • written 10.5 years ago by ▴ 370
1
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2
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1.4k
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EdgeR GLM following voom conversion of counts
limma voom edger rnaseq
updated 9.9 years ago by ★ 7.9k • written 9.9 years ago by • 0
0
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1
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4.3k
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Subset VCF files using multiple criteria
vcf variantannotation granges
9.9 years ago georgewwp • 0
4
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4
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2.2k
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Is this design matrix correct (treament factor with three levels)?
edger limma design matrix
9.9 years ago Ekarl2 ▴ 80
1
vote
6
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1.1k
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converting numbers to names
software error R
updated 9.9 years ago by ★ 29k • written 9.9 years ago by ▴ 40
0
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1
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1.3k
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How can I download affy version 1.36.1?
affy
9.9 years ago burton.mendonca • 0
2
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12
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Estimating dispersions - deseq2 or other
deseq2
updated 9.9 years ago by 53k • written 9.9 years ago by • 0
3
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4
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2.6k
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Random effects with limma's camera()
limma camera duplicatecorrelation
updated 9.9 years ago by 53k • written 9.9 years ago by ▴ 30
1
vote
3
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5.5k
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DESeq heatmap based on threshold
deseq2
9.9 years ago John ▴ 30
0
votes
2
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2.2k
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Random effects metagenomeSeq
model.matrix
updated 9.9 years ago by ▴ 30 • written 10.0 years ago by • 0
1
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5
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2.3k
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diffHic preparePairs() does not identify paired-end reads
diffHic preparePairs paired BAM
updated 9.9 years ago by ★ 29k • written 9.9 years ago by • 0
0
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0
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How can I do paired test on my Illumina 450k idat files with ChAMP package?
Illumina 450k ChAMP paired test
9.9 years ago walter_teng • 0
2
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3
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i need AGI code as my probset
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10.1 years ago • updated 9.9 years ago Angel ▴ 40
2
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2
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2.0k
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Paired analysis and batch effects ?
ruvseq sva edger
updated 9.9 years ago by ★ 7.9k • written 9.9 years ago by ▴ 10
1
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0
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Trouble pickSoftThreshold() large dataset WGCNA
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9.9 years ago sventhedestroyer ▴ 10
1
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2
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2.8k
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RUVg or RUVs
ruvseq
updated 9.9 years ago by ▴ 10 • written 9.9 years ago by ▴ 80
1
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2
replies
1.6k
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Can bplapply timeout when waiting for long jobs?
biocparallel
updated 9.9 years ago by 25k • written 9.9 years ago by • 0
3
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5
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Interpretation for MRfulltable of fitzig in Metagenomeseq
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updated 9.9 years ago by ▴ 280 • written 9.9 years ago by • 0
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11
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t-statistic cutoff for finding DMRs with bsseq
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updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 680
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ABOUT CPM FILTERING IN EDGER
edger
updated 9.9 years ago by ★ 29k • written 9.9 years ago by ▴ 40
0
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0
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Job: Bioinformatics Data Analyst in Cancer Immunology
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9.9 years ago Jaritz,Markus ▴ 20
1
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1
reply
1.6k
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I can not create the HeatMap chart on DEseq2
deseq2 R
updated 9.9 years ago by 43k • written 9.9 years ago by • 0
1
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1
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GenomeViz
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updated 9.9 years ago by • 0 • written 21.0 years ago by ▴ 80
0
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2
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Gviz - ReverseStrand incompatible with just.group="above"
gviz
updated 9.9 years ago by ▴ 750 • written 9.9 years ago by ▴ 10
2
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4
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Weird error after trying to subset an microarray expression set with gene symbols from topTable function from limma
expressionset limma annotation affymetrix microarrays
updated 9.9 years ago by 25k • written 9.9 years ago by ▴ 840
0
votes
2
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could not find function "DNAcopy"
dnacopy
updated 9.9 years ago by 25k • written 9.9 years ago by • 0
0
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1
reply
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Error in MEDIPS.calibrationCurve looking for different methylation profiles
medips R
updated 9.9 years ago by ▴ 570 • written 9.9 years ago by • 0
0
votes
2
replies
2.7k
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error nonzero exit
illuminahumanmethylation450k.db rnbeads
updated 9.9 years ago by • 0 • written 10.4 years ago by • 0
2
votes
12
replies
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‘IlluminaHumanMethylation450k.db’ had non-zero exit status
IlluminaHumanMethylation450k.db
updated 9.9 years ago by • 0 • written 11.2 years ago by • 0
3
votes
3
replies
6.0k
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Gviz - Cannot plot exons from gencode GTF files
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9.9 years ago romain.fenouil ▴ 10
0
votes
10
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motifStack crashes for example from documentation
motifstack
updated 9.9 years ago by ★ 1.3k • written 9.9 years ago by ▴ 40
0
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4
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Illumina ID Mapping library
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9.9 years ago kritikamish99 ▴ 10
0
votes
0
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Low yield mapping ensembl transcript ids to entrez gene ids in biomart
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9.9 years ago serpalma.v ▴ 60
46,712 results • Page 412 of 935
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