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18
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News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 4 weeks ago
shepherl
3.9k
10
votes
15
replies
2.8k
views
News:
BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA
conference
bioc2017
News
7.2 years ago • updated 6.9 years ago
Martin Morgan
25k
20
votes
13
replies
3.5k
views
News:
markdown is coming to the support site
markdown
News
6.8 years ago • updated 6.2 years ago
Lucas Schiffer
▴ 240
4
votes
11
replies
1.7k
views
News:
Bioconductor 3.8 is released
bioconductor
news
release
News
updated 5.4 years ago by
restat110
• 0 • written 5.6 years ago by
Valerie Obenchain
★ 6.8k
8
votes
10
replies
2.1k
views
News:
Bioconductor 3.2 is released!
news
News
updated 8.6 years ago by
JunLVI
▴ 40 • written 8.6 years ago by
Dan Tenenbaum
★ 8.2k
4
votes
9
replies
3.0k
views
News:
Ensembl release 84 is out!
ensembl
mart
release84
biomart
ensembl release
News
updated 8.1 years ago by
arielpaulson
▴ 20 • written 8.2 years ago by
Thomas Maurel
▴ 800
1
vote
8
replies
1.5k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.2 years ago by
shepherl
3.9k
14
votes
8
replies
2.7k
views
News:
Bioconductor packages now each have a DOI.
doi
citation
News
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
Sean Davis
21k
9
votes
8
replies
6.7k
views
News:
new package `ggtree` in devel branch
ggtree
phylogenetic
News
updated 9.3 years ago by
remi.tournebize
▴ 10 • written 9.3 years ago by
Guangchuang Yu
★ 1.2k
5
votes
7
replies
1.5k
views
News:
Updated support site
news
News
9.6 years ago
Martin Morgan
25k
9
votes
7
replies
3.1k
views
News:
Conference: BioC 2016: Where Software and Biology Connect, Stanford, 24-26 June
BioC2016
Conference
News
updated 7.9 years ago by
shepherl
3.9k • written 8.3 years ago by
Martin Morgan
25k
0
votes
7
replies
759
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
11 weeks ago • updated 27 days ago
shepherl
3.9k
1
vote
7
replies
1.1k
views
News:
ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
annotationdata
annotationhub
ensembl
gtf
2bit
News
5.6 years ago
shepherl
3.9k
6
votes
6
replies
3.3k
views
News:
Bioconductor Git/GitHub Mirrors
git
github
git-svn bridge
subversion
News
updated 8.9 years ago by
Guangchuang Yu
★ 1.2k • written 8.9 years ago by
Dan Tenenbaum
★ 8.2k
3
votes
6
replies
1.2k
views
News:
Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software
Bioconductor
Devel
devel
updated 14 months ago by
darrelvanhoy
• 0 • written 14 months ago by
shepherl
3.9k
0
votes
5
replies
1.3k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
2.6 years ago • updated 2.1 years ago
shepherl
3.9k
5
votes
5
replies
2.8k
views
News:
Invitation to submit articles to the Bioconductor gateway on F1000Research
publication
News
6.1 years ago
Sean Davis
21k
2
votes
5
replies
3.4k
views
News:
New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
profileplyr
ATACSeq
DiffBind
ComplexHeatmap
ChIPSeq
updated 17 months ago by
Junsik
• 0 • written 3.0 years ago by
Rory Stark
★ 5.2k
3
votes
5
replies
1.4k
views
News:
sorted the results of function dba.report in DiffBind R package
diffbind
News
updated 5.5 years ago by
Rory Stark
★ 5.2k • written 5.5 years ago by
bioqianyang
• 0
12
votes
5
replies
1.9k
views
News:
DOI for packages
DOI
doi
packages
citation
publication
News
6.6 years ago
shepherl
3.9k
5
votes
5
replies
2.1k
views
News:
Ensembl 88 is out!
ensembl
ensembl mart
biomart
e!88
News
7.1 years ago
Thomas Maurel
▴ 800
7
votes
5
replies
3.0k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 8.6 years ago by
Laurent Gatto
1.6k • written 8.7 years ago by
Mark Dunning
★ 1.1k
0
votes
5
replies
1.7k
views
News:
Ensembl 79 release is out!
Ensembl
biomart
release
news
News
updated 9.2 years ago by
Dan Tenenbaum
★ 8.2k • written 9.2 years ago by
amonida
▴ 20
0
votes
4
replies
1.2k
views
News:
European Bioconductor Conference 2023 planning
Europe
Conference
EuroBioC
Events
News
updated 4 days ago by
angelaesper43
• 0 • written 19 months ago by
Maria Doyle
▴ 70
7
votes
4
replies
1.7k
views
News:
Bioconductor 3.7 is released
bioconductor
release
News
written 6.1 years ago by
Valerie Obenchain
★ 6.8k
9
votes
4
replies
2.8k
views
News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
9.5 years ago
Wei Shi
★ 3.6k
0
votes
4
replies
1.2k
views
News:
List of Deprecated Packages for Bioc3.15
Devel
Deprecation
Release
Bioconductor
2.1 years ago • updated 19 months ago
shepherl
3.9k
0
votes
4
replies
1.2k
views
News:
BridgeDb build fails due to website unavailability
bridgedbr
News
4.5 years ago • updated 4.1 years ago
egon.willighagen
▴ 10
0
votes
4
replies
772
views
News:
Important Bioconductor Release 3.18 deadlines this week
Release
Devel
release
devel
updated 7 months ago by
Guido Hooiveld
★ 4.0k • written 7 months ago by
shepherl
3.9k
0
votes
3
replies
1.0k
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 4.1 years ago by
kayla.interdonato
▴ 160 • written 4.1 years ago by
shepherl
3.9k
3
votes
3
replies
1.1k
views
News:
Bioconductor code of conduct
biocon
code-of-conduct
Bioconductor
updated 3.3 years ago by
Lluís Revilla Sancho
▴ 730 • written 3.3 years ago by
Laurent Gatto
1.6k
1
vote
3
replies
1.3k
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 5.5 years ago by
Wolfgang Huber
★ 13k • written 5.5 years ago by
shepherl
3.9k
0
votes
3
replies
1.1k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
5.0 years ago
shepherl
3.9k
10
votes
3
replies
3.1k
views
News:
Updates to BiocStyle formatting
BiocStyle
vignettes
rmarkdown
latex
News
6.8 years ago
Andrzej Oleś
▴ 750
4
votes
3
replies
917
views
News:
Bioconductor 3.9 is released
bioconductor
release
News
5.1 years ago
shepherl
3.9k
0
votes
3
replies
1.1k
views
News:
New Package Submission Workflow Updates!
new packages
submission
bioconductor
News
updated 2.8 years ago by
jonathan.dekermanjian
• 0 • written 3.9 years ago by
shepherl
3.9k
6
votes
3
replies
2.3k
views
News:
New Bioconductor package for dbSNP151
SNPlocs.Hsapiens.dbSNP151.GRCh38
BSgenome
News
5.9 years ago
Hervé Pagès
16k
13
votes
3
replies
2.2k
views
News:
Bioconductor teaching week
teaching
Carpentries
written 21 months ago by
Laurent Gatto
1.6k
1
vote
3
replies
1.2k
views
News:
PLEASE READ: devel packages in release channel
news
News
8.6 years ago
Dan Tenenbaum
★ 8.2k
1
vote
3
replies
1.3k
views
News:
European Bioconductor meeting 2019, 9 - 10 December in Brussels, Belgium
conference
EuroBioc
News
4.7 years ago • updated 4.6 years ago
Laurent Gatto
1.6k
2
votes
3
replies
1.4k
views
News:
List of Deprecated Packages for Bioc3.8
package
release
deprecate
News
5.8 years ago
shepherl
3.9k
10
votes
2
replies
936
views
News:
SUPPORT SITE UPGRADE COMPLETE
SupportSite
updated 3.6 years ago by
Steve Lianoglou
★ 13k • written 3.6 years ago by
shepherl
3.9k
4
votes
2
replies
1.7k
views
News:
ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb
ensembldb
annotation
AnnotationHub
News
3.7 years ago
Johannes Rainer
★ 2.0k
4
votes
2
replies
1.8k
views
News:
Announcing new test coverage shields
test coverage
News
8.9 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
1.2k
views
News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
written 6.1 years ago by
shepherl
3.9k
0
votes
2
replies
1.4k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
3.3 years ago • updated 3.1 years ago
mchakiachvili
▴ 20
1
vote
2
replies
1.4k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
3.6 years ago
shepherl
3.9k
0
votes
2
replies
775
views
News:
List of Deprecated Packages for Bioc3.16
Release
Deprecation
Devel
Bioconductor
19 months ago
shepherl
3.9k
1
vote
2
replies
792
views
News:
Ensembl 108 has been released!
biomaRt
ensembldb
ensembl
written 19 months ago by
Louisse
▴ 10
0
votes
2
replies
1.7k
views
News:
ChIPpeakAnno::getAnnotation get Exons
chippeakanno
News
updated 9.2 years ago by
Ou, Jianhong
★ 1.3k • written 9.2 years ago by
Julie Zhu
★ 4.3k
495 results • Page
1 of 10
Recent ...
Replies
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
James W. MacDonald
66k
Yes, you can use `limma`.
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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