0
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0
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1.2k
views
Visualize FlowSet by Date
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8.6 years ago Maria • 0
0
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0
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TSCANorder return less cell number than the raw cell number
TSCAN software error
8.6 years ago yancychy • 0
1
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1
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1.8k
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Add flowclust gate to gatingset
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updated 8.6 years ago by ★ 1.3k • written 8.6 years ago by ▴ 20
0
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1
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1.8k
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GSEA threshold question
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8.6 years ago bhgyu ▴ 30
0
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1
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IDMapper issue in PSICQUIC
PSICQUIC
updated 8.6 years ago by ▴ 50 • written 8.6 years ago by • 0
4
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9
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3.1k
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Limma is doing the right way to calculate the fold change?
limma proteomics
updated 8.6 years ago by 1.6k • written 8.6 years ago by ▴ 30
0
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4
replies
3.0k
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Gviz : sort reads in AlignmentsTracks and display reads containing indels
gviz
updated 8.6 years ago by ★ 1.6k • written 8.7 years ago by • 0
1
vote
3
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1.5k
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find fold change in DESeq2 results
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updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 100
2
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3
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Getting between sample/within sample normalized gene expression values from DESeq2
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updated 8.6 years ago by 43k • written 8.6 years ago by • 0
0
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2
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WGCNA: error message in blockwiseModule(): address 0x0, cause 'memory not mapped'
wgcna
updated 8.6 years ago by ★ 3.0k • written 8.6 years ago by • 0
0
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1
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1.4k
views
trackviewer lolliplot pie.stack
lolliplot trackviewer
updated 8.6 years ago by ★ 1.3k • written 8.6 years ago by • 0
0
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0
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Meta-Analysis chip-seq data
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8.6 years ago rezapanahi222 • 0
0
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1
reply
1.6k
views
DiffBind error Error in pv.getPlotData
DiffBind
updated 8.6 years ago by ★ 5.2k • written 8.6 years ago by ▴ 10
5
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1
reply
1.9k
views
IHWpaper: choice of `nbins=4` in `proteomics_example_analysis.R`
ihw
updated 8.6 years ago by ▴ 180 • written 8.6 years ago by ▴ 10
2
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1
reply
2.9k
views
Correcting for Batch Effects Prior to Differential Gene Expression Analysis with limma
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updated 8.6 years ago by ★ 29k • written 8.6 years ago by • 0
2
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5
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Trouble with DESeq2, edgeR, and limma not accepting zeros in input
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updated 8.6 years ago by 53k • written 8.6 years ago by • 0
0
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1
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1.0k
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Biomart error on association gene symbols name
biomart deseq2
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 40
0
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1
reply
912
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BiocLite installation problem
bioconductor
updated 8.6 years ago by 25k • written 8.6 years ago by ▴ 10
1
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2
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RStudio in Bioconductor 3.5 AMI incompatible with R 3.4
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updated 8.6 years ago by 4.3k • written 8.6 years ago by ▴ 90
0
votes
1
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789
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efetch result not in character format
R
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
4
votes
6
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3.3k
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Bioconductor open source policy
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updated 8.6 years ago by 68k • written 8.6 years ago by • 0
0
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4
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1.2k
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Dendogram from read count to show correlation between biological replicate and samples
bioconductor
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 10
7
votes
12
replies
10k
views
Confused in the usage of formula in DESeq or DESeq2
deseq2 deseq
updated 8.6 years ago by ▴ 60 • written 11.2 years ago by ▴ 20
1
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0
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1.5k
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News: complete set of OrgDb packages have been added to AnnotationHub
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8.6 years ago shepherl 4.3k
0
votes
1
reply
1.6k
views
Problem with DEGseq/samWrapper
degseq
updated 8.6 years ago by • 0 • written 11.1 years ago by ▴ 30
5
votes
5
replies
2.1k
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BiocParallel: messages shown only when processes finished
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updated 8.6 years ago by 25k • written 8.6 years ago by ★ 2.1k
0
votes
0
replies
1.5k
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Minfi reading command error
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8.6 years ago niutster • 0
1
vote
9
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DESeq2 differential gene expression with multiple development stage and tissues
deseq2
updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 10
3
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4
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1.5k
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deseq2 and dexseq for multiple tissue from wildtype only
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updated 8.6 years ago by 43k • written 8.6 years ago by • 0
0
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3
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Inverse logFC on DESeq2 Rstudio
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updated 8.6 years ago by 43k • written 8.6 years ago by • 0
0
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2
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LIMMA 2x2 with time
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updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 60
0
votes
3
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3.5k
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read count summed over exons is greater tham the gene-level read count using featureCounts
rsubread featurecounts exon mRNAseq
updated 8.6 years ago by ★ 3.6k • written 8.6 years ago by ▴ 10
2
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2
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2.5k
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tximport error: TXNAME from Txdb.mm10 and kallisto target_id mismatch
tximport kallisto txdb.mmusculus.ucsc.mm10.knowngene
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
2
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9
replies
3.3k
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ensembldb salmon deseq2 txt2import right tool?
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8.6 years ago aaron.dickey • 0
1
vote
1
reply
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unable to update packages: foreign, Matrix
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updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 30
2
votes
3
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1.7k
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PureCN can classify indel variants as germline vs. somatic ?
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updated 8.6 years ago by ▴ 130 • written 8.6 years ago by • 0
0
votes
0
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Optimizing the deepSplit parameter in dynamicTreeCut
dynamicTreeCut
8.6 years ago johnmcma ▴ 10
6
votes
16
replies
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DiffBind Batch Effect
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8.7 years ago • updated 8.6 years ago niu.shengyong ▴ 10
0
votes
2
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DNAString - Long String
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updated 8.6 years ago by 16k • written 8.6 years ago by • 0
0
votes
1
reply
826
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Issues with .extractEnsemblReleaseFromDbVersion() and get_organism_from_Ensembl_Mart_dataset()
genomicfeatures
updated 8.6 years ago by 16k • written 8.6 years ago by ▴ 10
0
votes
4
replies
2.0k
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problem in installing flowclust
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updated 8.6 years ago by 4.3k • written 8.6 years ago by • 0
0
votes
3
replies
2.2k
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Question about the ChIPpeakAnno:
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updated 8.6 years ago by • 0 • written 11.8 years ago by ★ 4.3k
3
votes
14
replies
5.0k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
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8.6 years ago daniel.carbajo • 0
3
votes
2
replies
1.5k
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GenomicRanges::gaps() not working as expected
genomicranges
8.6 years ago jfiksel ▴ 30
2
votes
3
replies
3.5k
views
BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel parallel
8.6 years ago davide risso ▴ 980
0
votes
3
replies
1.9k
views
Error in Error in checkFullRank(modelMatrix) Deseq2
deseq2
updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 20
2
votes
11
replies
2.7k
views
DESeq2 polysome profiling analysis with 2 interaction terms
deseq2 sequencing polysome profiling
updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 10
0
votes
2
replies
1.9k
views
Normalization for comparative transcriptomics between species
deseq2 wgcna
updated 8.6 years ago by 43k • written 8.6 years ago by • 0
0
votes
4
replies
2.2k
views
setting contrast in edgeR for time series data
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updated 8.6 years ago by ★ 29k • written 8.6 years ago by • 0
4
votes
2
replies
1.9k
views
sc3_plot_expression, colour labels
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updated 8.6 years ago by ▴ 150 • written 8.6 years ago by ▴ 20
46,729 results • Page 328 of 935
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Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k
You may want to look at the coefficients you are trying to estimate with ExploreModelMatrix: https://www.bioconductor.org/packages/relea…
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Hi Gordon, Thanks for the quick reply. The technical or process blank samples I'm referring to are part of a set of quality control sampl…
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Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/
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apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…
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I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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