0
votes
1
reply
930
views
Finding all samples with specific gene
geo2r lima geoquery
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
0
votes
0
replies
1.3k
views
Use "gating.template" on data.table
data.table opencyto gating csv files R
8.6 years ago Rivka • 0
0
votes
6
replies
2.7k
views
CRLMM: Error in quantile.default(M, c(1, 5)/6, names = FALSE)
crlmm
updated 8.6 years ago by ▴ 1000 • written 9.4 years ago by ▴ 120
2
votes
3
replies
2.3k
views
bsseq combineList: how to get an HDF5Array-backed object as return value?
bsseq
updated 8.6 years ago by ▴ 760 • written 8.6 years ago by ▴ 20
1
vote
1
reply
2.9k
views
DeSeq2 MA plot
deseq2 MA
updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 10
0
votes
2
replies
1.1k
views
DESeq2 on 2 genotypes versus 1 control
deseq2
updated 8.6 years ago by 43k • written 8.6 years ago by • 0
7
votes
5
replies
5.6k
views
Application of Deseq2 to mass spec data
deseq2
updated 8.6 years ago by 1.6k • written 8.6 years ago by • 0
0
votes
1
reply
2.9k
views
Installation of samr package on R v3.4 mac OS Sierra
samr
updated 8.6 years ago by ▴ 50 • written 8.6 years ago by • 0
0
votes
1
reply
2.5k
views
exon counting with featureCounts
RNAseq
8.6 years ago inah ▴ 10
1
vote
2
replies
2.3k
views
Cannot read plink files correctly
snprelate Tutorial
updated 8.6 years ago by ▴ 30 • written 8.6 years ago by • 0
0
votes
0
replies
1.6k
views
Job: Post-Doc Biostatistics/Bioinformatics for high-dimensional transcriptomic data
bioinformatician/biostatistician position statistical inference high dimensionnal omics R Job
8.6 years ago julie.chevalier • 0
0
votes
5
replies
3.9k
views
Which raw files (RNAseq) to download?
bioconductor rnaseq
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
0
votes
1
reply
1.5k
views
bug in dba.overlap (dba.plotVenn)
DiffBind bugs
updated 8.6 years ago by ★ 5.2k • written 8.6 years ago by • 0
0
votes
3
replies
2.9k
views
Venn diagram using contrasts in DiffBind
diffbind
updated 8.6 years ago by ★ 5.2k • written 8.6 years ago by • 0
0
votes
4
replies
3.1k
views
DESeq2, outlier correction, Combat, NMF
deseq2 combat outliers NMF
updated 8.6 years ago by 43k • written 8.6 years ago by • 0
1
vote
8
replies
2.7k
views
Global reduction of epigenetic factors (regularized log transformation DESeq2) ~ Diffbind
deseq2 diffbind
updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 40
1
vote
0
replies
1.6k
views
News: Ensembl 89 has been released
ensembl biomart ensemblbiomart ensembl89 News
8.6 years ago Thomas Maurel ▴ 800
0
votes
1
reply
1.6k
views
Supporting grch38 and making the species agnostic pcf function in copynumber package
copynumber
8.8 years ago • updated 8.6 years ago shrirambhosle • 0
1
vote
6
replies
2.6k
views
Nonspecific filtering of microarray data
microarray affymetrix microarrays pre-filtering filtering nonspecific filtering
updated 8.6 years ago by ★ 13k • written 8.6 years ago by • 0
2
votes
8
replies
1.7k
views
package eisa: object 'ath1121501ENTREZID' not found
object 'ath1121501ENTREZID' not found
updated 8.6 years ago by ★ 4.1k • written 8.6 years ago by ▴ 10
4
votes
1
reply
2.5k
views
WGCNA always requires trait data?
wgcna rnaseq
updated 8.6 years ago by ★ 13k • written 8.6 years ago by ▴ 20
0
votes
1
reply
1.8k
views
seqlevels/keepSeqLevels should set default pruning.mode by a getOption call
genomeinfodb
updated 8.6 years ago by 16k • written 8.6 years ago by ▴ 10
2
votes
5
replies
2.8k
views
ChIPQC gives Error subscript contains out-of-bounds ranges with custom transcript database
chipqc
updated 8.6 years ago by ▴ 420 • written 8.6 years ago by • 0
1
vote
1
reply
1.3k
views
Are significant genes ordered in maSigPro?
masigpro rnaseq
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
0
votes
3
replies
1.5k
views
Dr. Armin Ahmadvand
R rnaseq
8.6 years ago ahmadvandra • 0
0
votes
1
reply
1.1k
views
How to do normalization between different enzyme libraries and test the difference by diffHic.
diffhic
updated 8.6 years ago by ★ 29k • written 8.6 years ago by • 0
0
votes
1
reply
1.2k
views
pathway / net-work base analysis with somatic mutations
mutation pathways
8.6 years ago Haiying.Kong ▴ 110
1
vote
8
replies
2.0k
views
DESeq2 - selective calculation of differential gene expression
deseq2 deseq
updated 8.6 years ago by 43k • written 8.6 years ago by • 0
0
votes
1
reply
660
views
bvbiome installation issue
software error
updated 8.6 years ago by 25k • written 8.6 years ago by • 0
0
votes
1
reply
1.2k
views
installing package from bioconductor
software error
8.6 years ago m.shahdoost • 0
1
vote
13
replies
17k
views
GeneList issue ClusterProfiler
genelist clusterprofiler
8.6 years ago bhgyu ▴ 30
2
votes
2
replies
3.5k
views
DEXSeq prepare annotation on Stringtie outputGTF - KeyError: 'gene_id'
dexseq
8.6 years ago craigmonger ▴ 10
0
votes
2
replies
1.8k
views
Conflict in cnvr and cnvs result from cn.mops
cn.mops
updated 8.6 years ago by ▴ 540 • written 8.7 years ago by • 0
8
votes
14
replies
13k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa msaprettyprint() fasta
updated 8.6 years ago by • 0 • written 9.0 years ago by ▴ 50
5
votes
5
replies
3.5k
views
Samples without pair in paired design experiment
paired samples deseq2
updated 8.6 years ago by 53k • written 8.6 years ago by ▴ 90
0
votes
2
replies
2.1k
views
Intramodular connectivity RNA-seq WGCNA
wgcna
updated 8.6 years ago by ★ 3.0k • written 8.6 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Robustness of Splat cell grouping
splatter
8.6 years ago luke.zappia ▴ 50
0
votes
4
replies
2.3k
views
ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is Inf
ChIPQC ChIPQCreport
updated 8.6 years ago by ▴ 420 • written 8.6 years ago by ▴ 60
4
votes
2
replies
1.8k
views
ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC ChIPQCreport
updated 8.6 years ago by ▴ 420 • written 8.6 years ago by ▴ 60
1
vote
1
reply
1.8k
views
older version of edger installation
edger
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
0
votes
0
replies
1.4k
views
Basic Question: How to get appropriate pDATA structure in monocle from cufflinks/cuffnorm
cufflinks monocle
8.6 years ago alexandriapinto1 ▴ 10
0
votes
4
replies
1.9k
views
Error: HelloRanges eval
HelloRanges bedtools
8.6 years ago bioinf ▴ 10
2
votes
1
reply
1.5k
views
gene expression data analysis and batch effect methods
batch effect gene expression
updated 8.6 years ago by ▴ 420 • written 8.6 years ago by • 0
4
votes
2
replies
3.6k
views
Problem with locfit after update bioconductor to Bioconductor version 3.5
software error
updated 8.6 years ago by ★ 13k • written 8.6 years ago by ▴ 10
2
votes
2
replies
1.7k
views
FlowCore: How to write edited flowSet
flowcore
updated 8.6 years ago by ★ 1.3k • written 8.6 years ago by • 0
0
votes
1
reply
1.4k
views
pca plot for tissues and protein values
pca
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 40
3
votes
3
replies
1.6k
views
Database for CNV Annotation
cnv annotation
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 110
2
votes
2
replies
1.8k
views
around 2000 Affy probe set IDs cannot be mapped with Ensembl IDs by BiomaRt
microarray annotation biomart hgu133a
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
0
votes
0
replies
1.6k
views
CummeRbund volcano plot infinite values
cummerbund rnaseq
8.6 years ago niu.shengyong ▴ 10
0
votes
4
replies
1.8k
views
Normalizing Affymetrix Multispecies miRNA-1 and miRNA-2 array simultaneously
normalization mirna array
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 40
46,711 results • Page 329 of 935
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Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
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Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
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