Showing : Network • reset
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News: Online course: Network Analysis in Systems Biology with R/Bioconductor
SystemsBiology Bioconductor Network
6 months ago info ▴ 10
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1
reply
703
views
WGCNA Soft Power
Normalization DESeq2 Network RNASeqData
updated 10 months ago by ★ 4.5k • written 10 months ago by • 0
1
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1
reply
1.1k
views
How to select subnetworks, or regions, with a certain number of nodes or edges with RCy3
Network RCy3
updated 10 months ago by ▴ 30 • written 11 months ago by ▴ 90
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2
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701
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StringDB: Cannot use payload mechanism to colour nodes
RNASeqData STRINGdb DifferentialExpression GraphAndNetwork Network
11 months ago Luca • 0
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2
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1.5k
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using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
updated 6 months ago by • 0 • written 24 months ago by • 0
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10
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2.5k
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Interprteting the phylogenomic profiles plot
syntenet synteny Network
written 24 months ago by • 0
0
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1
reply
4.3k
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Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
Network cluster WGCNA RNASeq
updated 16 months ago by 67k • written 16 months ago by • 0
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754
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News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
16 months ago info ▴ 10
0
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3
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761
views
Clustering coefficient of synteny network
Network syntenet Clustering coefficient
16 months ago Alexandros • 0
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1.1k
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WGCNA: minModuleSize is not responding correctly
Network minModuleSize WGCNA wgcna
24 months ago • updated 7 weeks ago bioinformaticssrm2011 • 0
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957
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Gene co-expression network analysis with small sample size
Network
2.1 years ago Senthil • 0
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673
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WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
Network Transcriptomics MicrobiomeData RNASEQ WCGNA
2.2 years ago Julieta • 0
2
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1
reply
991
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WGCNA: weird issue of module with a single gene
network co-expression WGCNA
updated 2.2 years ago by ▴ 50 • written 2.2 years ago by ▴ 10
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1
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1.5k
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WGCNA: Obtaining a consensus network from sampledBlockwiseModules function output
Network consensus sampledBlockwiseModules resampling WGCNA
updated 2.8 years ago by ★ 3.0k • written 2.9 years ago by ▴ 30
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1
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1.2k
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Trouble with gene dendrogram
Network RNASeq WGCNA
updated 22 months ago by • 0 • written 3.0 years ago by ▴ 10
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948
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WGCNA error during network construction
WGCNA Network R
3.1 years ago gitanjali • 0
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1
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2.1k
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Network analysis: Is low confidence score valid (STRING DB)
STRINGdb Network
updated 3.4 years ago by ★ 4.0k • written 3.5 years ago by • 0
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981
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Job: Postdoc in computational cancer biology at IEO, Milan, Italy
TCGAbiolinks BiomedicalInformatics Network
3.6 years ago martin.schaefer • 0
0
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0
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1.4k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
3.9 years ago jol.espinoz ▴ 40
15
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17
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26k
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WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 4.0 years ago by ▴ 760 • written 8.2 years ago by ▴ 40
4
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2
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1.3k
views
iSEE - Custom Panel
Network GeneNetwork iSEE
updated 4.0 years ago by ★ 28k • written 4.0 years ago by • 0
3
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2
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6.3k
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Calculation of module membership in WGCNA
WGCNA RNA-seq ModuleMembership Network Hub gene
updated 2.5 years ago by ▴ 10 • written 4.3 years ago by ▴ 80
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2
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2.6k
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Soft-threshold in WGCNA
wgcna network bicor threshold
updated 4.3 years ago by ★ 3.0k • written 4.3 years ago by ▴ 80
2
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0
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650
views
Quality Metrics for Graph Clustering for Biological Networks
R protein-interaction networks network
4.4 years ago hamza_karakurt ▴ 60
5
votes
2
replies
5.3k
views
[WGCNA]How to visualize network of genes in one module
WGCNA network
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 30
2
votes
4
replies
2.2k
views
Case-control study using WGCNA
wgcna network rna-seq
5.0 years ago Arindam ▴ 80
1
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1
reply
1.9k
views
WGCNA gene clusters vs eigengenes
wgcna network coexpression eigengenes
updated 5.2 years ago by 51k • written 5.2 years ago by ▴ 10
2
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1
reply
1.7k
views
Normalize within-/between-samples RNA-seq counts to weight networks
normalization CQN deseq2 RNA-seq network
updated 5.5 years ago by 42k • written 5.5 years ago by • 0
4
votes
3
replies
1.1k
views
WGCNA from different lengths RNAseq read
wgcna network co-expression rnaseq
updated 5.6 years ago by ★ 3.0k • written 5.6 years ago by ▴ 80
7
votes
9
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4.7k
views
WGCNA - networking RNA seq gives only one module!
WGCNA R network co-expression
updated 22 months ago by ★ 3.0k • written 5.6 years ago by ▴ 10
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1
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1.8k
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igraph clustering for gene coexpression network
igraph network gene corexpression rna-seq
updated 3.3 years ago by 51k • written 5.6 years ago by • 0
0
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0
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956
views
Help with creating tumor cell line network
nci network
6.5 years ago torgeirous • 0
0
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0
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1.2k
views
Help with generating network from gene expression data
gene expression network cytoscape
6.8 years ago torgeirous • 0
1
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1
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1.5k
views
Setting soft threshold when comparing 2 networks in WGCNA?
wgcna coexpression cooccurrence coabundance network
updated 7.1 years ago by ▴ 760 • written 7.1 years ago by ▴ 40
1
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1
reply
1.7k
views
Custom scoring for subnetworks in BioNet
bionet network
updated 8.4 years ago by ▴ 120 • written 8.4 years ago by ▴ 660
1
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2
replies
1.5k
views
Additional high-scoring subnetworks in BioNet
bionet network
updated 8.4 years ago by ▴ 120 • written 8.4 years ago by ▴ 660
0
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2
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2.9k
views
WGCNA - Using real data for tutorial III
pathways wgcna network rna-seq
8.9 years ago hywel.williams • 0
5
votes
14
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5.3k
views
Connection Refused on port 9000 - RCytoscape
rcytoscape r network graphBAM object
updated 8.9 years ago by ★ 8.2k • written 8.9 years ago by ▴ 50
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0
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1.3k
views
Job: Post-doc: Bioinformatics/Metabolic networks (Genoscope, near Paris, France)
network metabolism post-doc Job
9.1 years ago kbastard • 0
2
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5
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1.5k
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runing NetBenchmark on my own datasets
software error network
updated 9.1 years ago by ▴ 20 • written 9.1 years ago by ▴ 40
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0
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1.4k
views
PSICQUIC: Direction of interaction
network protein interaction analysis
9.4 years ago kmezhoud ▴ 10
1
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2
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3.2k
views
cnetplot() - library(clusterProfiler)
clusterProfiler network
9.4 years ago cristina della beffa ▴ 30
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0
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1.6k
views
Job: Help with finding R tutors for microarray analysis, next generation sequencing and constructing gene interaction networks needed
bioconductor microarray network tutoring differential gene expression Job
9.9 years ago Thomas.F.Hahn2 • 0
1
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7
replies
3.0k
views
Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
shiny network interactions
10.1 years ago pshannon ▴ 100
1
vote
2
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4.3k
views
Rearrange dendrogram to match merged modules in WGCNA?
wgcna dendrogram network hclust
updated 10.1 years ago by ▴ 180 • written 10.1 years ago by ▴ 260
2
votes
6
replies
5.1k
views
Error running TOMplot in WGCNA package
wgcna network
updated 10.2 years ago by ▴ 180 • written 10.2 years ago by ▴ 260
7
votes
1
reply
3.7k
views
Using RNA-Seq raw count data in Weighted Gene Co-Expression Network Analysis
rnaseq network limma
updated 10.2 years ago by ★ 13k • written 10.2 years ago by ▴ 260
8
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4
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7.4k
views
WGCNA: overlapping colors in plotDendroAndColors?
wgcna plotDendroAndColors Network
updated 10.2 years ago by ★ 3.0k • written 10.2 years ago by ▴ 180
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0
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1.2k
views
回复： XVector
Network Cancer IRanges XVector
10.2 years ago Hervé Pagès 16k
1
vote
1
reply
1.6k
views
WGCNA_ Eigengene and sample complications correlations
Network Network
updated 10.4 years ago by ★ 3.0k • written 10.4 years ago by ▴ 130
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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Popular Question to Fred Hutch (Recruiting) ▴ 40
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