Bioconductor Tutorial

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Training Bioconductor Event Community Tutorial

2.8 years ago Maria Doyle ▴ 110

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1.9k

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beginner Bioconductor tutorial examples

updated 4.0 years ago by Gordon Smyth 53k • written 4.0 years ago by Sara • 0

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1.8k

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tutorial DESeq2 pasilla

5.0 years ago Carina • 0

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3.7k

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mass spectrometry proteomics metabolomics Tutorial

written 5.3 years ago by Johannes Rainer ★ 2.1k

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4.8k

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limma deseq2 Tutorial

updated 5.4 years ago by Gordon Smyth 53k • written 5.4 years ago by yuemolinn • 0

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1.3k

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tximport Cufflink Tutorial

updated 5.4 years ago by Kevin Blighe ★ 4.0k • written 5.4 years ago by LeiaMax2020 • 0

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1.1k

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deseq2 Tutorial

updated 5.5 years ago by Kevin Blighe ★ 4.0k • written 5.5 years ago by taniachavarria79 • 0

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1.9k

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clusterProfiler r Tutorial

updated 5.5 years ago by Kevin Blighe ★ 4.0k • written 5.5 years ago by adR ▴ 40

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1.4k

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STRT-Seq single-cell tutorial

updated 5.6 years ago by Aaron Lun ★ 29k • written 5.6 years ago by tiphaine.martin • 0

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1.1k

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deseq2 Tutorial

updated 5.7 years ago by Michael Love 43k • written 5.7 years ago by Anna.bramucci • 0

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2.6k

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bioconductor libdrstats Tutorial

written 5.8 years ago by Leonardo Collado Torres ★ 1.1k

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3.3k

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software error Tutorial

updated 5.8 years ago by Zuguang Gu ▴ 290 • written 5.8 years ago by AR3513 • 0

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3.1k

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salmon tximeta Tutorial

5.8 years ago Michael Love 43k

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2.8k

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DEXSeq log2foldchange Tutorial

updated 4.4 years ago by rohitsatyam102 ▴ 20 • written 5.9 years ago by tmvarsha ▴ 20

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13k

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curl biomart getBM Tutorial

updated 5.9 years ago by James W. MacDonald 68k • written 5.9 years ago by Ni-Ar ▴ 10

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3.8k

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R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by crgarcia • 0

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18k

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deseq2 combat Knownbatcheffect Tutorial

updated 5.0 years ago by Samuel Daniel • 0 • written 6.3 years ago by rajeshparmar4 ▴ 10

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1.3k

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DMCHMM Tutorial

updated 6.4 years ago by shepherl 4.3k • written 6.4 years ago by shokoohi • 0

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7.1k

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scRNA monocle packages Tutorial

6.4 years ago 444579004 • 0

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1.8k

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deseq2 annotation Tutorial

updated 6.5 years ago by Martin Morgan 25k • written 6.5 years ago by trumbia • 0

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4.2k

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software error Tutorial

updated 6.5 years ago by Laurent Gatto 1.6k • written 6.5 years ago by naeemurself • 0

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2.2k

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Tutorial annotation

updated 4.4 years ago by Kevin Blighe ★ 4.0k • written 6.5 years ago by prodhan82 ▴ 20

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2.5k

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software error esATAC zlib.h Ubuntu Tutorial

updated 6.6 years ago by Martin Morgan 25k • written 6.6 years ago by vedbar • 0

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2.6k

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ATACseqQC ATAC ATACseq software error Tutorial

updated 6.6 years ago by Steve Lianoglou ★ 13k • written 6.6 years ago by mbasam • 0

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2.8k

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clusterProfiler font size Tutorial

updated 6.8 years ago by Gordon Smyth 53k • written 6.8 years ago by bony.dekumar ▴ 10

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2.5k

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deseq2 limma edger Tutorial

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by wwu222 • 0

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2.6k

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minfi Tutorial infinium450K

updated 4 months ago by Michael Love 43k • written 7.0 years ago by lalchungnungabt17 • 0

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11k

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support.bioconductor.org editor markdown updates Tutorial

written 7.0 years ago by shepherl 4.3k

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2.8k

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monocle differential gene expression detectgenes function Tutorial

7.0 years ago S.Webb6 ▴ 40

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1.9k

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snp multiple sequence alignment fasta Tutorial

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by pltbiotech_tkarthi • 0

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1.6k

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deseq2 tximport tximportdata pasilla Tutorial

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by Stanley Yang • 0

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1.6k

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GSVA tutorial

updated 7.4 years ago by Robert Castelo ★ 3.4k • written 7.4 years ago by owen.whitley ▴ 10

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edger Tutorial

updated 7.5 years ago by Hotz, Hans-Rudolf ▴ 400 • written 7.5 years ago by ilovesuperheroes1993 • 0

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1.9k

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edger plot Tutorial

updated 7.5 years ago by Gordon Smyth 53k • written 7.5 years ago by Juan • 0

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2.7k

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limma normalization Tutorial

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by devarajsaranya • 0

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2.7k

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gseabase msigdb genesetcollection Tutorial

written 7.6 years ago by t.kuilman ▴ 170

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4.3k

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Tutorial tximport

updated 5 months ago by Michael Love 43k • written 7.8 years ago by nelson.s.garcia ▴ 10

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3.6k

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ChAMP tutorial

7.8 years ago Dave Emir • 0

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2.8k

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deseq2 genetics Tutorial

updated 7.8 years ago by James W. MacDonald 68k • written 7.8 years ago by anokhi1997 • 0

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7.3k

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R GEO geoquery geoquery error message Tutorial

8.0 years ago martinguerrerog89 ▴ 20

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2.6k

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methylkit Tutorial

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by s1432985 • 0

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1.9k

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deseq2 Tutorial

updated 8.3 years ago by Gordon Smyth 53k • written 8.3 years ago by mariamari693693 • 0

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2.7k

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SC3 single cell single-cell Tutorial

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by ahmed.elewa ▴ 20

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3.1k

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pathview korg subscript out of bounds Tutorial

updated 8.4 years ago by Luo Weijun ★ 1.6k • written 8.4 years ago by aacevedo • 0

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2.9k

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subversion bioc-devel package development usedevel Tutorial

8.5 years ago Bohdan Khomtchouk ▴ 10

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5.0k

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public data TCGA GTEx Tutorial

8.5 years ago shepherl 4.3k

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4.0k

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single-cell objectstorage Tutorial

8.5 years ago shepherl 4.3k

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4.0k

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biocstyle Rmarkdown Tutorial

8.5 years ago Wolfgang Huber ★ 13k

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2.3k

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snprelate Tutorial

updated 8.7 years ago by zhengx ▴ 30 • written 8.7 years ago by AR3513 • 0

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3.2k

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LEA Tutorial lfmm

updated 5 months ago by Michael Love 43k • written 8.7 years ago by afreedman405 • 0

76 results • Page 1 of 2

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Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

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Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k