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One-tailed test edgeR possible?
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How we could calculate the sample size for ATAC seq and single cell RNA seq, respectively?
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3.2 years ago gogniu • 0
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DESeq2 effect of interaction when using a grouping variable
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updated 3.1 years ago by 700 • written 3.2 years ago by ★ 1.6k
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tx2gene object trouble when working with kallisto and A.thaliana
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updated 3.2 years ago by 68k • written 3.2 years ago by ▴ 10
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cqn package : Error in if (any(lengths <= 0)) stop("argument 'lengths' need to be greater than zero") : missing value where TRUE/FALSE needed
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3.2 years ago Sally • 0
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3.2 years ago Rom • 0
0
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1
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empty values when extracting beta values using the GEOquery
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DESeq2 says my sampleinfo has linear combination error but I don't see it...
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2
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How to process and analyze Total RNA-Seq data?
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3.2 years ago mohammedtoufiq91 ▴ 10
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plotDEXSeq error?
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3.2 years ago barrypraveen • 0
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3.2 years ago hyu • 0
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Option request for featureCounts: Add an order of read manipulation to 'shift > reduction > extension'
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Trouble with importing transcript counts with Salmon
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KEGGgraph parseKGML2Graph function
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updated 3.2 years ago by 68k • written 3.2 years ago by • 0
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Error in DESeqDataSetFromHTSeqCount
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0
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1
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946
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Transcriptome assembly: single individual or pooled samples
transcriptome splicing assembly
updated 3.2 years ago by 68k • written 3.2 years ago by ▴ 20
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3.2 years ago • updated 3.1 years ago vanbelj ▴ 30
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EnhancedVolcano legendPosition error
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SingleR error with multiple references
SingleR
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is it possible to limit fgsea to particular tissue type?
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3.2 years ago kavator ▴ 30
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3.2 years ago whduke • 0
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Single-Cell Data Simulation from Bulk RNA-seq
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how to plot iranges in r version 4.0.0?
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Limma: posterior distribution of error variance
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3.2 years ago gabriel.hoffman ▴ 170
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Error with DESeq2: DESeqDataSet(se, design = design, ignoreRank) : counts matrix should be numeric, currently it has mode: character
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updated 3.2 years ago by ★ 5.0k • written 3.2 years ago by • 0
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Simple queryAE command returning "Error: 1: Document is empty"
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3.2 years ago alekeuro ▴ 10
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PCA input data from DRAGEN RNA pipeline
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updated 3.2 years ago by ★ 4.0k • written 3.2 years ago by • 0
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How to modify a compensation matrix in an fcs file
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3.2 years ago aguirre ▴ 20
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3.2 years ago p.m.craven • 0
3
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6
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3.2 years ago Sara • 0
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OligoArrayAux fails to compile
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3.2 years ago fabian.roger08 ▴ 10
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Bambu input file format issue
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3.2 years ago L ▴ 50
0
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Failed Construction of DESEQDataSet Object: C.Elegans
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updated 3.2 years ago by 68k • written 3.2 years ago by • 0
1
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Strange error with RMA during Affymetrix data analysis
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3.2 years ago shepherl 4.3k
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paired tests with tidybulk and edgeR
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46,726 results • Page 71 of 935
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Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/
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apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…
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I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
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Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
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Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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