Bioconductor Tutorial

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support.bioconductor.org editor markdown updates Tutorial

updated 10 weeks ago by vs • 0 • written 6.8 years ago by shepherl 4.2k

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Training Bioconductor Event Community Tutorial

2.5 years ago Maria Doyle ▴ 100

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beginner Bioconductor tutorial examples

updated 3.7 years ago by Gordon Smyth 53k • written 3.7 years ago by Sara • 0

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Tutorial annotation

updated 4.1 years ago by Kevin Blighe ★ 4.0k • written 6.3 years ago by prodhan82 ▴ 20

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geoquery geometadb sradb Tutorial

written 10.4 years ago by Sean Davis 21k

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tutorial DESeq2 pasilla

4.7 years ago Carina • 0

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mass spectrometry proteomics metabolomics Tutorial

written 5.1 years ago by Johannes Rainer ★ 2.1k

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limma deseq2 Tutorial

updated 5.1 years ago by Gordon Smyth 53k • written 5.1 years ago by yuemolinn • 0

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tximport Cufflink Tutorial

updated 5.1 years ago by Kevin Blighe ★ 4.0k • written 5.1 years ago by LeiaMax2020 • 0

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deseq2 Tutorial

updated 5.2 years ago by Kevin Blighe ★ 4.0k • written 5.2 years ago by taniachavarria79 • 0

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clusterProfiler r Tutorial

updated 5.2 years ago by Kevin Blighe ★ 4.0k • written 5.2 years ago by adR ▴ 40

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STRT-Seq single-cell tutorial

updated 5.4 years ago by Aaron Lun ★ 29k • written 5.4 years ago by tiphaine.martin • 0

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deseq2 Tutorial

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by Anna.bramucci • 0

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bioconductor libdrstats Tutorial

updated 5.5 years ago by Laurent Gatto 1.6k • written 5.5 years ago by Leonardo Collado Torres ★ 1.1k

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software error Tutorial

updated 5.5 years ago by Zuguang Gu ▴ 290 • written 5.5 years ago by AR3513 • 0

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salmon tximeta Tutorial

5.6 years ago Michael Love 43k

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DEXSeq log2foldchange Tutorial

updated 4.2 years ago by rohitsatyam102 ▴ 20 • written 5.6 years ago by tmvarsha ▴ 20

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curl biomart getBM Tutorial

updated 5.6 years ago by James W. MacDonald 68k • written 5.6 years ago by Ni-Ar ▴ 10

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R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by crgarcia • 0

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deseq2 combat Knownbatcheffect Tutorial

updated 4.7 years ago by Samuel Daniel • 0 • written 6.1 years ago by rajeshparmar4 ▴ 10

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DMCHMM Tutorial

updated 6.2 years ago by shepherl 4.2k • written 6.2 years ago by shokoohi • 0

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scRNA monocle packages Tutorial

6.2 years ago 444579004 • 0

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deseq2 annotation Tutorial

updated 6.2 years ago by Martin Morgan 25k • written 6.2 years ago by trumbia • 0

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software error Tutorial

updated 6.2 years ago by Laurent Gatto 1.6k • written 6.2 years ago by naeemurself • 0

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software error esATAC zlib.h Ubuntu Tutorial

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by vedbar • 0

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ATACseqQC ATAC ATACseq software error Tutorial

updated 6.4 years ago by Steve Lianoglou ★ 13k • written 6.4 years ago by mbasam • 0

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clusterProfiler font size Tutorial

updated 6.5 years ago by Gordon Smyth 53k • written 6.5 years ago by bony.dekumar ▴ 10

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deseq2 limma edger Tutorial

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by wwu222 • 0

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minfi Tutorial infinium450K

updated 7 weeks ago by Michael Love 43k • written 6.7 years ago by lalchungnungabt17 • 0

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monocle differential gene expression detectgenes function Tutorial

6.8 years ago S.Webb6 ▴ 40

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snp multiple sequence alignment fasta Tutorial

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by pltbiotech_tkarthi • 0

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deseq2 tximport tximportdata pasilla Tutorial

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by Stanley Yang • 0

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GSVA tutorial

updated 7.1 years ago by Robert Castelo ★ 3.4k • written 7.2 years ago by owen.whitley ▴ 10

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edger Tutorial

updated 7.2 years ago by Hotz, Hans-Rudolf ▴ 400 • written 7.2 years ago by ilovesuperheroes1993 • 0

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edger plot Tutorial

updated 7.2 years ago by Gordon Smyth 53k • written 7.2 years ago by Juan • 0

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limma normalization Tutorial

updated 7.3 years ago by James W. MacDonald 68k • written 7.3 years ago by devarajsaranya • 0

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gseabase msigdb genesetcollection Tutorial

written 7.4 years ago by t.kuilman ▴ 170

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Tutorial tximport

updated 7 weeks ago by Michael Love 43k • written 7.5 years ago by nelson.s.garcia ▴ 10

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ChAMP tutorial

7.6 years ago Dave Emir • 0

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deseq2 genetics Tutorial

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by anokhi1997 • 0

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mooc Tutorial

updated 7.6 years ago by ifmrdatascience • 0 • written 10.2 years ago by Kasper Daniel Hansen ★ 6.5k

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R GEO geoquery geoquery error message Tutorial

7.8 years ago martinguerrerog89 ▴ 20

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methylkit Tutorial

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by s1432985 • 0

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deseq2 Tutorial

updated 8.0 years ago by Gordon Smyth 53k • written 8.0 years ago by mariamari693693 • 0

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SC3 single cell single-cell Tutorial

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by ahmed.elewa ▴ 20

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pathview korg subscript out of bounds Tutorial

updated 8.1 years ago by Luo Weijun ★ 1.6k • written 8.1 years ago by aacevedo • 0

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subversion bioc-devel package development usedevel Tutorial

8.2 years ago Bohdan Khomtchouk ▴ 10

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public data TCGA GTEx Tutorial

8.3 years ago shepherl 4.2k

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single-cell objectstorage Tutorial

8.3 years ago shepherl 4.2k

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biocstyle Rmarkdown Tutorial

8.3 years ago Wolfgang Huber ★ 13k

76 results • Page 1 of 2

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Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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