Showing : sequencing • reset
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97
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News: Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
sequencing Sequencing SequencingData
21 days ago communication • 0
0
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0
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335
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is Dada2 biased toward a particular sequence ?
virology dada2 amplican Sequencing RNASeq
6 months ago Sara • 0
2
votes
5
replies
1.4k
views
Merge GRanges, ignore strand
Sequencing SummarizedExperiment GRanges
20 months ago Marcus • 0
0
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0
replies
763
views
Job: Tenure-track Group Leader Positions in Computational Biology and Biological Chemistry
bioinformatics genomics proteomics biologicalchemistry sequencing
2.3 years ago Robert Castelo ★ 3.3k
6
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6
replies
1.4k
views
Batch effect from to sequencing data at differents depths
Sequencing sequencingDeepth BatchEffect DESeq2
2.5 years ago ary.lech ▴ 10
0
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0
replies
1.0k
views
Job: Bioinformatician position at University of Texas Southwestern Medical Center
Sequencing bioinformatics
2.5 years ago chao.xing • 0
1
vote
3
replies
878
views
Preferential sequencing of longer Genes in Illumina?
DESeq2 sequencing
updated 3.1 years ago by • 0 • written 3.1 years ago by • 0
2
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2
replies
828
views
is the P value reliable if the counts are Low across the sample ?
DESeq2 sequencing
3.1 years ago simplyphage • 0
0
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0
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956
views
Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
3.2 years ago Robert Castelo ★ 3.3k
0
votes
0
replies
1.1k
views
Job: Post-doc position in multi-omics of Alzheimer's disease at Columbia University in New York City
JobPosting postdoc sequencing multiomics
3.3 years ago • updated 3.2 years ago lhd • 0
0
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0
replies
895
views
Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
3.3 years ago António Miguel de Jesus Domingues ▴ 510
0
votes
0
replies
910
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
4.1 years ago jiyeon.choi2 • 0
0
votes
0
replies
918
views
Job: Post-doc fellow - Aparicio Lab
single cell bioinformatics genome sequencing Job
4.6 years ago jmaanaki • 0
0
votes
2
replies
1.3k
views
DESeq2 error on analyzing microbiome data
deseq2 microbiome sequencing
4.8 years ago zhigang.li • 0
2
votes
3
replies
1.4k
views
Boxplot function not showing all reads length on x-axis
boxplot reads fastq sequencing rsubread
updated 4.9 years ago by ★ 3.6k • written 4.9 years ago by ▴ 60
0
votes
1
reply
828
views
Annotating protein sequences
Protein iranges sequencing
5.1 years ago ieuangw • 0
0
votes
0
replies
2.6k
views
Job: Postdoc in Population Genomics - UC Davis
bioinformatics evolution sequencing genome analysis genomics Job
5.5 years ago hschmidt • 0
0
votes
0
replies
992
views
Job: Research Associate- Production Bioinformatics - Atlantic Cancer Research Institute - Moncton -New Brunwsiwck - Canada
cancer bioinformatics bioinformatician job sequencing Job
5.7 years ago gabriel.wajnberg • 0
1
vote
10
replies
2.2k
views
Ribo-seq/RNA-seq analysis -- DESeq2 multi-factor design
deseq2 sequencing ribosome profiling riboseq multiple factor design
updated 5.7 years ago by 41k • written 5.7 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Job: Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
cancer sequencing rnaseq methylation smallrna Job
5.9 years ago Andy Lynch ▴ 120
0
votes
0
replies
832
views
Number of reads needed for Guide-Seq
sequencing
6.0 years ago Jacques-P.Tremblay • 0
1
vote
1
reply
2.7k
views
Rsamtools : separating mapped and unmapped reads from BAM or SAM files (for a newbie)
R sequencing alignment rsamtools mapping
updated 6.0 years ago by 65k • written 6.0 years ago by ▴ 10
0
votes
0
replies
920
views
Sequence composition effect
sequencing rnaseq_analysis
6.3 years ago alemutak • 0
0
votes
1
reply
1.8k
views
write ab1 files
sangerseqr sequencing abi
6.6 years ago tmolosh • 0
2
votes
11
replies
1.9k
views
DESeq2 polysome profiling analysis with 2 interaction terms
deseq2 sequencing polysome profiling
updated 6.9 years ago by 41k • written 6.9 years ago by ▴ 10
0
votes
0
replies
1.7k
views
Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
7.7 years ago dtlabmskcc • 0
8
votes
2
replies
3.6k
views
Appropriate ways to filter counts data for voom/limma
limma edger sequencing
updated 7.7 years ago by 50k • written 7.7 years ago by ▴ 10
6
votes
4
replies
1.5k
views
How to normalize chemical genomics barcode sequencing data
limma normalization sequencing edger
updated 7.9 years ago by ★ 28k • written 7.9 years ago by ▴ 20
0
votes
4
replies
2.8k
views
DNAString: Standard checksum function?
Biostrings FASTA sequencing
8.2 years ago • updated 8.1 years ago Henrik Bengtsson ★ 2.4k
2
votes
4
replies
1.5k
views
Complex ANOVA analysis in EdgeR
edger anova sequencing
updated 8.2 years ago by ★ 28k • written 8.2 years ago by • 0
0
votes
5
replies
2.2k
views
getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
updated 8.2 years ago by ▴ 20 • written 8.2 years ago by • 0
0
votes
4
replies
1.6k
views
IONiseR readFast5Summary Error
R sequencing preprocessing bioconductor
updated 8.4 years ago by ★ 6.5k • written 8.4 years ago by • 0
1
vote
0
replies
1.7k
views
Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
8.4 years ago Yassen Assenov ▴ 10
1
vote
1
reply
2.4k
views
Trim DNAStringSets using ShortRead while keeping the primer sequences?
sequencing biostrings shortread
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 10
1
vote
2
replies
2.1k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing snp
updated 8.6 years ago by ▴ 20 • written 8.6 years ago by • 0
1
vote
2
replies
1.3k
views
Can I use rtracklayer to get the sequence surrounding a set of variants?
rtracklayer sequencing reference genome
8.7 years ago Stephanie M. Gogarten ▴ 870
1
vote
1
reply
2.2k
views
Perplexing results with Limma with RNA-seq data
sequencing microarray
updated 8.7 years ago by ★ 13k • written 8.7 years ago by ▴ 420
3
votes
1
reply
2.3k
views
Adjusting for gender using limma
limma microarray sequencing
updated 8.7 years ago by 65k • written 8.7 years ago by ▴ 420
0
votes
1
reply
1.5k
views
Getting data on the out-of-frame transcripts
annotate sequencing genomicfeatures
updated 8.8 years ago by 16k • written 8.8 years ago by • 0
3
votes
4
replies
3.4k
views
Variance filtering prior to RNA-seq differential expression
sequencing deseq limma
updated 8.8 years ago by 50k • written 8.8 years ago by ▴ 420
4
votes
2
replies
2.2k
views
Detect global differences in miRNA expression between tumor and normal using spike-ins
edger limma mirna sequencing
updated 8.8 years ago by ★ 28k • written 8.8 years ago by ▴ 40
2
votes
3
replies
1.7k
views
SVA batch effects for different technologies
normalization deseq2 sequencing sva
8.9 years ago marcin.bazyliszek • 0
4
votes
0
replies
1.5k
views
News: Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing transcription variantfiltering annotation News
8.9 years ago Matthew Ritchie ▴ 1000
3
votes
0
replies
1.7k
views
News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
8.9 years ago • updated 8.7 years ago Matthew Ritchie ▴ 1000
0
votes
0
replies
1.7k
views
Job: Bioinformatics Scientist, Astex Pharmaceuticals
bioinformatician job oncology sequencing drug development Job
8.9 years ago Harpreet Saini ▴ 30
1
vote
0
replies
1.3k
views
Genome editing analysis with Illumina sequencing
indel sequencing alignment
9.0 years ago Merienne Nicolas ▴ 120
0
votes
0
replies
999
views
Invitation Research Collaborations
cancer microarray mirna sequencing
9.1 years ago alexandru.floares • 0
0
votes
0
replies
1.6k
views
Job: Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job sequencing methylation expression Job
9.2 years ago Andy Lynch ▴ 120
3
votes
3
replies
2.9k
views
Clarrification of ReadDNAStringSet
sequencing
9.3 years ago khouloud.madbouh • 0
0
votes
0
replies
1.3k
views
Job: Computational Biologist Research Associate Position at the University of Cambridge
cancer sequencing prostate Job
9.5 years ago Andy Lynch ▴ 120
50 results • Page 1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank" by James W. MacDonald 65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0 by Michael Love 41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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