Bioconductor Error

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error lazy R biomaRt table

updated 13 months ago by juo5 • 0 • written 18 months ago by Abhishek ▴ 20

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biomart error

9.4 years ago anchel.gonzalez • 0

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edger error

updated 4.9 years ago by Gordon Smyth 52k • written 4.9 years ago by pdunn • 0

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Gostats go term annotation drosophila melanogaster error

updated 8.2 years ago by tlaguna ▴ 10 • written 8.9 years ago by nooshin ▴ 300

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deseq2 error

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by alextuck ▴ 30

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gage package error

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by Miskey, Csaba ▴ 20

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arrayqualitymetrics bugs error

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by daugherty_a • 0

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biomaRt error getBM

updated 3.9 years ago by Mike Smith ★ 6.6k • written 4.2 years ago by Zen ▴ 20

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HilbertCurve error bamfiles GRobject

5.6 years ago adklts • 0

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deseq2 results error

7.5 years ago hs.lansdell ▴ 20

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medips medip-seq error lukas

updated 8.0 years ago by Matthias Lienhard ▴ 280 • written 8.0 years ago by anupriyaverma1408 • 0

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seq2pathway error python mac os x

9.6 years ago termanini ▴ 10

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biomart error ensembldb

7.2 years ago • updated 7.1 years ago Yuqia • 0

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biomart error ensembl bioconductor ensembl mart

7.9 years ago daniel.carbajo • 0

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geoquery error getgeo microarray geo

updated 7.3 years ago by Sean Davis 21k • written 8.0 years ago by jblack29 • 0

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error biocinstaller

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by tagirdzh • 0

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error mac DESeq2 GenomeInfoDb R

4.3 years ago • updated 4.2 years ago Dan ▴ 20

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annotation error

updated 9.5 years ago by James W. MacDonald 68k • written 9.5 years ago by knishida ▴ 20

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TCGA tcgabiolinks download error

updated 7.5 years ago by eshelden ▴ 40 • written 7.5 years ago by Talip ▴ 10

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variantannotation seqlevels error

updated 10.6 years ago by Valerie Obenchain ★ 6.8k • written 10.6 years ago by Asma rabe ▴ 290

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deseq2 error

updated 9.7 years ago by Michael Love 43k • written 9.7 years ago by frankS ▴ 10

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value ebimage writeImage error

8.0 years ago valerian.meline • 0

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compEpiTools error heatmap

updated 7.6 years ago by mattia pelizzola ▴ 200 • written 7.6 years ago by ma1478 • 0

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deseq2 error

8.6 years ago lauren.fitch • 0

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10k

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limma differential expression design matrix error eset

updated 9.8 years ago by Aaron Lun ★ 28k • written 9.8 years ago by Vani ▴ 20

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deseq2 chipseq counts log2fc error

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by robin.uchiyama • 0

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annotation error

8.1 years ago tullyij1 • 0

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R error software error Rsubread featurecounts

updated 6.1 years ago by Wei Shi ★ 3.6k • written 6.1 years ago by edejong • 0

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cummerbund bug error

7.8 years ago tannerndrsn4 ▴ 20

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limma microarray error

updated 5.8 years ago by Dario Strbenac ★ 1.6k • written 5.8 years ago by Jurat Shahidin ▴ 80

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edger rnaseq error

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by melissabarrett747 • 0

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edger error

updated 6.0 years ago by James W. MacDonald 68k • written 6.0 years ago by lucap • 0

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dmrcate error

updated 9.4 years ago by Tim Peters ▴ 230 • written 9.4 years ago by Eric Smith • 0

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deseq2 error

updated 3.6 years ago by Michael Love 43k • written 7.8 years ago by anpham ▴ 70

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GDCdow tcgabiolinks error tcgadownload download_error

updated 6.4 years ago by Tiago Chedraoui Silva ▴ 260 • written 6.4 years ago by miki716 • 0

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deseq2 replicates error DESeqDataSetFromMatrix

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by Yonatan Amzaleg • 0

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1.9k

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TCGAbiolinks GDCprepare error

updated 5.8 years ago by Tiago C. Silva ▴ 270 • written 5.8 years ago by Talip ▴ 10

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2.0k

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software error error tcgabiolinks GDCquery

updated 7.5 years ago by eshelden ▴ 40 • written 7.5 years ago by jrlarsen ▴ 10

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1.4k

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biomart error plants_mart getSequence

7.5 years ago vsn ▴ 10

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1.0k

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dependencies error

updated 7.4 years ago by Aaron Lun ★ 28k • written 7.4 years ago by ericaugustoito • 0

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variantannotation library error

updated 9.7 years ago by Valerie Obenchain ★ 6.8k • written 9.7 years ago by kmu004 ▴ 50

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edaseq error rna-seq normalization

updated 8.9 years ago by davide risso ▴ 980 • written 8.9 years ago by reba.duncan • 0

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1.9k

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minfi preprocessing error

updated 8.6 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.6 years ago by lily • 0

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package updates error

updated 9.7 years ago by Dan Tenenbaum ★ 8.2k • written 9.7 years ago by sircoulombf • 0

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cnanorm addDNACopy Error

8.6 years ago karim • 0

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eBayes limma error

updated 7.8 years ago by James W. MacDonald 68k • written 7.8 years ago by calen.p.ryan • 0

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opossom layout error

8.0 years ago kimagure_ ▴ 10

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ballgown scan error package

7.9 years ago • updated 7.8 years ago spaque57 • 0

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goseq unsupported organisms supportedgenomes supportedorganisms error

updated 8.2 years ago by Gordon Smyth 52k • written 8.2 years ago by tootiki • 0

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7.5k

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clusterprofiler input files error help

updated 8.1 years ago by Guangchuang Yu ★ 1.2k • written 8.1 years ago by Mataivic • 0

50 results • Page 1 of 1

Recent ...

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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0

`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/

Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…

Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

Comment: DESeq2 Design controlling for gender by donnycrimson • 0

On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…

Votes

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

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