Showing : RSTUDIO • reset
0
votes
7
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2.1k
views
DESeq2 output used for PCA plot on R studio
DESeq2 RSTUDIO PCAtools
updated 11 months ago by ★ 1.4k • written 11 months ago by • 0
0
votes
0
replies
514
views
RN to EC Mapping Not Working for Some Nodes
RStudio ggkegg
updated 15 months ago by 68k • written 15 months ago by • 0
2
votes
3
replies
861
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
16 months ago R_Page • 0
0
votes
2
replies
992
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio plotPCA DESeq2
16 months ago yee • 0
1
vote
3
replies
847
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 16 months ago by 68k • written 16 months ago by • 0
4
votes
6
replies
2.5k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
updated 5 months ago by • 0 • written 16 months ago by • 0
0
votes
7
replies
3.6k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 16 months ago by 68k • written 16 months ago by • 0
0
votes
1
reply
664
views
FALSE error when checking a pre made sample data
Rstudio scRNAseq DESeq2
updated 19 months ago by ★ 4.8k • written 19 months ago by • 0
0
votes
1
reply
2.2k
views
DESeq2 error after installing BiocManager
scRNAseq RStudio DESeq2
updated 19 months ago by ★ 4.8k • written 19 months ago by • 0
0
votes
2
replies
1.6k
views
Usinig BiocParallel package in R with M1 MAC
RStudio R M1 BiocParallel Mac
updated 2.2 years ago by • 0 • written 2.4 years ago by • 0
0
votes
1
reply
1.2k
views
Bug: MOFA2 sets an environment variable that breaks knit in RStudio
RStudio MOFA2 bug knitr
updated 2.4 years ago by 68k • written 2.4 years ago by ▴ 430
0
votes
1
reply
1.1k
views
Issue with installation of a package.
RStudio flowFDA
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by • 0
0
votes
14
replies
5.5k
views
GenomeInfoDbData had non-zero exit status
DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus
updated 2.5 years ago by • 0 • written 2.7 years ago by • 0
4
votes
5
replies
3.1k
views
DESeq2::plotPCA plotting error
RStudio PCA DESeq2
written 2.9 years ago by • 0
0
votes
0
replies
1.6k
views
function GDCquery_Maf error
rstudio maftools
3.0 years ago misslubblys • 0
9
votes
14
replies
8.5k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 8 months ago by 4.1k • written 3.2 years ago by ▴ 40
0
votes
3
replies
1.9k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 3.1 years ago by 21k • written 3.2 years ago by ▴ 10
0
votes
0
replies
830
views
Read the first sequence from fasta file - TFBSTool
TFBSTools FASTA RStudio
3.4 years ago HELEN • 0
0
votes
1
reply
1.1k
views
TFBSTools and readFASTA
TFBSTools DNASeqData readFASTA DNA RStudio
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
0
votes
0
replies
831
views
TFBSTools- analysis for trascriprion factors
TFBSTools RStudio R
3.4 years ago HELEN • 0
1
vote
5
replies
3.0k
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2 RStudio
3.5 years ago Sonia • 0
0
votes
1
reply
2.7k
views
Unable to Install packages in R
rstudio
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
0
votes
4
replies
4.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
3.6 years ago HELEN • 0
5
votes
15
replies
16k
views
Can't able to install Seurat in Rstudio
Rstudio Seurat
updated 3.8 years ago by ★ 4.0k • written 3.8 years ago by • 0
1
vote
7
replies
4.2k
views
Error with hclust
dendrogram hclust textanalysis R RStudio
4.0 years ago • updated 3.9 years ago Abby ▴ 10
0
votes
1
reply
1.1k
views
Defining groups in Decipher by sequence position in the database (FASTA)
DefiningGroups RStudio DECIPHER Specificprimers
updated 4.1 years ago by ▴ 150 • written 4.1 years ago by • 0
1
vote
5
replies
5.8k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw rtracklayer http RStudio
updated 4.3 years ago by ★ 11k • written 4.3 years ago by • 0
0
votes
1
reply
1.2k
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub Shiny Rstudio
updated 5.1 years ago by 4.1k • written 5.1 years ago by • 0
0
votes
5
replies
2.2k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 5.4 years ago by ▴ 20 • written 5.4 years ago by • 0
2
votes
1
reply
10k
views
Error: status was 'SSL connect error'
bioconductor proxy macOS R RStudio
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 20
0
votes
5
replies
2.1k
views
Using RStudio AMI with localhost
RStudio AWS AMI
5.7 years ago bio-explorer • 0
3
votes
6
replies
2.2k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 30
1
vote
8
replies
3.2k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2 null summarizedexperiment rstudio
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
0
replies
2.2k
views
Error in contrasts<-(tmp, value = contr.funs[1 + isOF[nn]]) : contrasts can be applied only to factors with 2 or more levels
software error ballgown rstudio R stattest
6.0 years ago fatimarasool135 • 0
2
votes
4
replies
2.2k
views
make TxDb from list of genes
R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl
updated 23 months ago by ▴ 10 • written 6.3 years ago by • 0
0
votes
4
replies
2.0k
views
New computer won't install DESeq2
deseq2 rstudio install error
updated 6.5 years ago by 43k • written 6.5 years ago by • 0
2
votes
2
replies
4.4k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio heatmap.2
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
0
votes
1
reply
1.7k
views
Install Bioconductor package locally/temporarily
R rstudio package installation
updated 6.6 years ago by 25k • written 6.6 years ago by ▴ 20
0
votes
1
reply
2.2k
views
DeSeq2 installation on ubuntu fails
deseq2 R ubuntu bioconductor rstudio
updated 6.7 years ago by 43k • written 6.7 years ago by • 0
0
votes
0
replies
1.3k
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli rstudio
6.8 years ago arphatak • 0
1
vote
4
replies
1.9k
views
biomaRt scan error for latest assembly when indicating version Number
biomart rstudio ensembl mart
updated 7.1 years ago by ★ 6.6k • written 7.1 years ago by • 0
2
votes
4
replies
1.5k
views
R session terminates when trying to load affycoretools package
affycoretools Rstudio fatal error
updated 7.1 years ago by 68k • written 7.1 years ago by ▴ 10
0
votes
2
replies
4.2k
views
Error in file.choose() : file choice cancelled
package development bioconductor rstudio rmarkdown vignettes
7.4 years ago clarisbaby • 0
1
vote
2
replies
1.6k
views
Rstudio session aborts when using read.celfiles()
oligo package Rstudio fatal error microarray CEL
7.4 years ago biostR ▴ 10
0
votes
0
replies
1.9k
views
Problem with heatmap by ComplexHeatmap
complexheatmap Rstudio NOISeq
7.5 years ago Luiz • 0
0
votes
1
reply
2.2k
views
Trouble installing Bioconductor in R-studio (R version 3.3.1)
bioconductor rstudio
updated 7.7 years ago by 25k • written 7.7 years ago by • 0
1
vote
1
reply
5.3k
views
MA plot in R
rstudio r plotMA
7.8 years ago g.k • 0
0
votes
3
replies
3.0k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
7.8 years ago mszskb • 0
0
votes
4
replies
1.7k
views
problem in installing flowclust
rstudio flowclust
updated 7.8 years ago by 4.1k • written 7.8 years ago by • 0
0
votes
1
reply
1.4k
views
can a function outliers be applied for a flowframe?
bioconductor flow cytometry rstudio
updated 7.8 years ago by ▴ 360 • written 7.8 years ago by • 0
50 results • Page 1 of 1
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Comment: Annotation package for Manduca sexta by GA ▴ 10
Thank you!
Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k
If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k
Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …
Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Votes
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
A: Is logFC a log2 fold change or some other base in scran::findMarkers
Comment: Error in retrieving clinical data
What is the cheapest day to fly on American Airlines? {Ask_Expert}
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