Showing : package installation • reset
14
votes
21
replies
13k
views
Installing ShortRead - error: zlib not found even with zlib in LD_LIBRARY_PATH
package installation shortread dependency
updated 6.4 years ago by ▴ 240 • written 7.5 years ago by ▴ 60
0
votes
1
reply
1.3k
views
Biseq installation error
biseq package installation r
updated 6.8 years ago by 25k • written 6.8 years ago by • 0
0
votes
2
replies
2.0k
views
Rgraphviz installation from source on Linux (Fedora 28) w BioC 3.8 -- failure
package installation compilation error r package problem shared libraries loading error
6.9 years ago Martin Maechler ▴ 330
0
votes
2
replies
1.5k
views
Rsubread installation failed
r package installation
6.9 years ago justinkablan225 ▴ 10
1
vote
1
reply
3.6k
views
Installation of RCurl
package installation
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 110
1
vote
4
replies
2.2k
views
Error installing EWCE package
package installation EWCE not available (for r version 3.5.0)
updated 7.0 years ago by ★ 6.6k • written 7.0 years ago by • 0
0
votes
2
replies
11k
views
Is there a way to specify where BiocInstaller will install packages similar to the "lib=...." for install.packages?
biocinstaller custom library path installation package installation
updated 7.1 years ago by 68k • written 7.1 years ago by ▴ 20
1
vote
6
replies
1.8k
views
Cannot install flowViz package because dependency flowCore cannot be found, however flowCore has just been installed.
flowViz flowCore package installation
updated 7.1 years ago by 25k • written 7.1 years ago by ▴ 10
5
votes
5
replies
2.9k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite package installation withr biocinstaller rhtslib
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 150
0
votes
3
replies
3.1k
views
Support for devtools::install_version
package installation
7.2 years ago acekane1 • 0
0
votes
1
reply
2.3k
views
R says include dir is empty, but it's not.
R bioconductor biocinstaller package installation
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 20
0
votes
1
reply
1.9k
views
Install Bioconductor package locally/temporarily
R rstudio package installation
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Minci fails to install on Linux CentOS
R minfi package installation
7.3 years ago barbaraheude • 0
0
votes
4
replies
2.8k
views
ChIPQC error: "non-zero exit status"
software error package installation chipqc txdb.hsapiens.ucsc.hg18.knowngene
updated 7.3 years ago by 25k • written 7.3 years ago by • 0
0
votes
1
reply
3.3k
views
TxDb.Hsapiens.UCSC.hg19.knownGen installation fail - non-zero exit status
software error package installation genomicfeatures
updated 7.3 years ago by 25k • written 7.3 years ago by • 0
0
votes
6
replies
2.2k
views
Illumina Methylation Manifest Install
Install biocinstaller package installation
7.5 years ago julieumn • 0
2
votes
5
replies
1.4k
views
trouble in install DESeq2
deseq2 package installation
7.5 years ago yueli7 ▴ 20
0
votes
1
reply
987
views
problem installing bioconductor
bioconductor package installation
7.5 years ago kdarky2015 • 0
3
votes
2
replies
3.0k
views
Trouble installing bioconductor packages: ERROR: sub-architecture 'R' is not installed
package installation mac os x
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
0
votes
1
reply
1.4k
views
Prostar and DAPAR installation
install error package installation DAPAR prostar R version 3.4.4
7.5 years ago rita.reig • 0
0
votes
1
reply
1.4k
views
installation of Biocunductor packages in My home directory.
biocinstaller package installation installr
7.6 years ago vinod.acear ▴ 50
0
votes
1
reply
2.2k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by • 0
2
votes
3
replies
3.2k
views
hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
readaffy frma affy package installation hgu133a
7.6 years ago Chris Mancuso • 0
0
votes
5
replies
27k
views
package DESeq2 installation with R.
deseq2 R package installation
updated 4.4 years ago by 43k • written 7.6 years ago by • 0
0
votes
1
reply
1.4k
views
mzR installation on Ubuntu 16.04
mzr package installation ubuntu
updated 7.7 years ago by 1.6k • written 7.7 years ago by • 0
0
votes
4
replies
3.2k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 7.7 years ago by ★ 1.3k • written 8.1 years ago by ▴ 70
6
votes
2
replies
2.2k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 7.7 years ago by ★ 6.6k • written 7.7 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Installing DEseq packeges under windows10 , can't find library after succesful install
deseq2 package installation
updated 7.8 years ago by 43k • written 7.8 years ago by • 0
0
votes
7
replies
1.9k
views
Installing RnBeads via bioconductor - .onLoad failed in loadNamespace(), call: NULL
package installation .onload
7.8 years ago nicogerstner • 0
0
votes
1
reply
1.8k
views
biocLite("lpsymphony") consistently fails with linker errors (can't find static libraries to link)
lpsymphony package installation bioclite
updated 7.9 years ago by ▴ 10 • written 7.9 years ago by • 0
0
votes
2
replies
6.9k
views
An Installing error that cannot open URL
software error package installation version
updated 7.9 years ago by 25k • written 7.9 years ago by • 0
3
votes
2
replies
2.6k
views
Installation of MSA package fails
MSA package installation software error compilation error
updated 7.9 years ago by ▴ 300 • written 7.9 years ago by ▴ 10
3
votes
2
replies
2.5k
views
Rsamtools use for R version 3.4.1
rsamtools package installation samtools
updated 7.9 years ago by 68k • written 7.9 years ago by ▴ 60
0
votes
1
reply
1.7k
views
Error installing flowDensity on latest docker container
R package installation docker
updated 8.0 years ago by 4.2k • written 8.0 years ago by • 0
2
votes
7
replies
4.0k
views
Bioconductor installing pakage error, R 3.4.2, Ubuntu 17.10
bioconductor biocinstaller package installation
8.0 years ago martyferr90 ▴ 20
0
votes
1
reply
1.3k
views
problem in installing IlluminaHumanMethylationEPICanno.ilm10b2.hg19
R software error package installation
updated 8.0 years ago by 68k • written 8.0 years ago by • 0
1
vote
1
reply
1.7k
views
Changing R package dependencies
package installation dependencies bagfootr bagfoot
updated 8.0 years ago by 21k • written 8.0 years ago by ▴ 60
1
vote
2
replies
2.3k
views
Installation problem, S4Vectors, something about "apply_hotfix73465" not found
package installation s4vectors
updated 8.0 years ago by 25k • written 8.1 years ago by • 0
0
votes
1
reply
2.4k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 8.1 years ago by 25k • written 8.1 years ago by • 0
0
votes
2
replies
2.0k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation pd.hta.2.0
8.2 years ago alexander2073 • 0
1
vote
1
reply
1.2k
views
fail to install package commeRbund
package installation
updated 8.2 years ago by 25k • written 8.2 years ago by • 0
0
votes
2
replies
6.7k
views
Unable to install any bioconductor packages
R biocinstaller bioclite package installation
8.2 years ago sebastien200109 • 0
0
votes
1
reply
1.7k
views
Problems with packages that need libgfortran.so.3
software error bioconductor package installation
updated 8.2 years ago by 25k • written 8.2 years ago by • 0
1
vote
2
replies
1.5k
views
org.Rn,eg.db not yet available for R version 3.3.3
R package installation
updated 8.3 years ago by ★ 3.0k • written 8.3 years ago by ▴ 10
1
vote
12
replies
4.3k
views
Problem in installing bioconductor
package installation
8.3 years ago nosheenfaiz09 • 0
0
votes
3
replies
1.9k
views
Failed to install 'DOSE' package. Win10, 'single candle'
DOSE package installation windows10
8.3 years ago Yisong Zhen ▴ 200
1
vote
1
reply
4.6k
views
edgeR reinstall failure: edgeR.rdb' is corrupt
edgeR package installation
updated 8.4 years ago by ★ 29k • written 8.4 years ago by • 0
2
votes
3
replies
6.1k
views
Error during EBImage installation
ebimage ggtree package installation
updated 8.4 years ago by ▴ 750 • written 8.4 years ago by ▴ 10
3
votes
3
replies
4.1k
views
problem reinstalling Bioconductor package 'clusterProfiler' after updating R to 3.4.0
clusterprofiler package installation r update
updated 8.4 years ago by ▴ 10 • written 8.5 years ago by ▴ 10
7
votes
11
replies
17k
views
Error: package or namespace load failed for...
package installation flowviz flowcore rcpp flow cytometry
updated 8.4 years ago by 25k • written 8.4 years ago by ▴ 50
84 results • Page 1 of 2
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Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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