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Showing :
software error
•
reset
1
vote
16
replies
3.6k
views
Error: could not find function "dba"
software error
diffbind
dba
7.5 years ago
mmarins
• 0
1
vote
12
replies
3.2k
views
Rcytoscape Rstudio Error in xml.rpc(obj@uri, "Cytoscape.version") : Problems
software error
rcytoscape
xml
updated 9.5 years ago by
drsuuzzz
• 0 • written 9.5 years ago by
alessandro brozzi
▴ 120
1
vote
13
replies
5.7k
views
ERROR: dependency 'GO.db' is not available for package 'systemPipeR'
software error
7.8 years ago
phpaul2010
• 0
2
votes
12
replies
2.3k
views
Synapter - makeMaster() and synergise() functions warnings/fails
software error
warnings
synapter
9.4 years ago
sogueta
• 0
4
votes
17
replies
5.4k
views
Upgrade to 3.1 error
software error
updated 8.8 years ago by
Bogdan
▴ 670 • written 9.0 years ago by
Luobin
▴ 10
0
votes
8
replies
2.2k
views
How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation
software
software error
updated 7.9 years ago by
Julie Zhu
★ 4.3k • written 7.9 years ago by
mousheng xu
▴ 10
0
votes
11
replies
2.6k
views
package 'ChAMP' demo/test code fails at champ.CNA()
software error
updated 7.3 years ago by
Yuan Tian
▴ 90 • written 9.3 years ago by
Hamid Bolouri
▴ 90
0
votes
6
replies
4.2k
views
cummeRbund installation error on Ubuntu 14.04
software error
cummerbund
ubuntu
9.4 years ago • updated 9.1 years ago
mbk0asis
• 0
2
votes
6
replies
2.5k
views
Cn.mops error: Error in if (sum(rds.counts) == 0) { : missing value where TRUE/FALSE needed
software error
cn.mops
updated 7 weeks ago by
ama304374
• 0 • written 6.3 years ago by
daijieqiong
▴ 10
3
votes
8
replies
10k
views
RDAVIDWebService - Unable to sendViaPost to url etc etc - server time out
software error
david
rdavidwebservice
updated 8.7 years ago by
oops324
• 0 • written 9.1 years ago by
TriS
▴ 200
6
votes
4
replies
9.8k
views
converting integer to numeric
software error
8.3 years ago
Angel
▴ 40
1
vote
6
replies
1.7k
views
MSGFgui tries to locate MSGF.zip from a nonexistent UCSC source
MSGFplus
MSGFgui
software error
8.4 years ago
Owen.Leiser
• 0
5
votes
11
replies
2.6k
views
Certificate problem with ExperimentHub / AnnotationHub
software error
curatedmetagenomicdata
annotationhub
experimenthub
updated 7.4 years ago by
Levi Waldron
★ 1.1k • written 7.4 years ago by
morganx
▴ 10
0
votes
8
replies
1.5k
views
Error in running development version of PureCN
PureCN
software error
7.6 years ago • updated 7.5 years ago
hustlxc
• 0
0
votes
7
replies
3.5k
views
'CreateProcess' failed to run error with Rbowtie
software error
quasr
rbowtie
9.6 years ago
annabel.ferguson
• 0
0
votes
4
replies
2.2k
views
AnnotationHub Error HTTP status was '500 Internal Server Error'
annotationhub
software error
8.3 years ago
ness
• 0
0
votes
4
replies
1.8k
views
How to set the parameter "fragmentSize" in DiffBind and set parameter for paired-end CHIP-seq data?
diffbind
software error
updated 6.8 years ago by
Rory Stark
★ 5.2k • written 6.8 years ago by
xieyongjun93
• 0
1
vote
8
replies
3.0k
views
GenomicFeatures package ERROR
software error
genomicfeatures
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
liangwu887
• 0
1
vote
6
replies
16k
views
install new package from bioconductor
software error
bioconductor
updated 8.5 years ago by
Julie Zhu
★ 4.3k • written 8.5 years ago by
Tiphaine Martin
▴ 40
2
votes
6
replies
2.0k
views
Error in running ATACseqQC
software error
4.6 years ago • updated 4.5 years ago
Fei Liu
• 0
6
votes
4
replies
2.8k
views
Gviz highlighted regions displaying behind main plot
gviz
software error
updated 9.4 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.4 years ago by
Malcolm Perry
▴ 40
1
vote
3
replies
3.1k
views
maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error
maftools
tcgabiolinks
updated 6 weeks ago by
snijesh
▴ 20 • written 6.6 years ago by
Ramiro Magno
▴ 100
2
votes
8
replies
2.2k
views
error in getBM (biomaRt): "error: no such table: metadata"
biomaRt
software error
updated 2.8 years ago by
Mike Smith
★ 6.5k • written 3.9 years ago by
JINYI
• 0
3
votes
3
replies
1.4k
views
Repeated error loading DESqe2 - package xxx not found
deseq2
package
software error
updated 4.2 years ago by
Martin Morgan
25k • written 4.2 years ago by
DcL-A
• 0
12
votes
6
replies
12k
views
makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
software error
maketxdbfrombiomart
updated 8.4 years ago by
Maciej Jończyk
• 0 • written 8.5 years ago by
luigi.cerulo
▴ 40
6
votes
11
replies
3.7k
views
arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics
svg
software error
updated 7.9 years ago by
Stane
▴ 40 • written 9.4 years ago by
Paulo Nuin
▴ 200
2
votes
4
replies
2.1k
views
running msa (msa) aborts R session
msa
alignment
r
software error
written 6.4 years ago by
ans74
• 0
0
votes
5
replies
1.6k
views
Rsubread crash on Mac during alignment
software error
rsubread
7.2 years ago • updated 6.9 years ago
raf4
▴ 20
1
vote
9
replies
1.6k
views
IONiseR error when using the readFast5Summary function on nanopore data
ioniser
software error
bioconductor
7.5 years ago
mv340788
• 0
1
vote
3
replies
1.7k
views
buildKEGGmap doesn´t work - library(clusterProfiler)
clusterprofiler
software error
updated 9.0 years ago by
Guangchuang Yu
★ 1.2k • written 9.0 years ago by
cristina della beffa
▴ 30
1
vote
6
replies
4.1k
views
Gviz issue: crashing when AnnotationTrack( ... , just.group="above")
software error
bug
crash
Gviz
updated 7.7 years ago by
florian.hahne@novartis.com
★ 1.6k • written 7.9 years ago by
Philip Lijnzaad
▴ 160
1
vote
4
replies
3.0k
views
Problem retrieving graphics in clusterprofiler
software error
clusterprofiler
GO
genesetenrichment
8.0 years ago
José Luis Lavín
▴ 10
1
vote
3
replies
1.4k
views
Problem with frma median_polish
software error
frma
updated 8.6 years ago by
Matthew McCall
▴ 830 • written 8.6 years ago by
Thomas Pfau
▴ 20
1
vote
5
replies
1.6k
views
Making package compatible with old version of R/Bioconductor
bioconductor
R
software error
biocinstaller
7.9 years ago
gabriel.hoffman
▴ 110
0
votes
6
replies
2.5k
views
problem to load data into ChIPpeakAnno
software error
7.5 years ago
crisprucd
• 0
6
votes
4
replies
1.2k
views
Missing KRAS in locateVariants or TxDb.Hsapiens.UCSC.hg19.knownGene?
software error
annotation
updated 9.6 years ago by
Valerie Obenchain
★ 6.8k • written 9.6 years ago by
ckr123_tw
▴ 10
3
votes
5
replies
7.6k
views
Wgcna with missing values - error with calculation of bicor correlations in pickSoftThreshold and blockwiseModules
software error
rnaseq
wgcna
missing data
8.4 years ago • updated 8.0 years ago
dvillarlozano
▴ 10
1
vote
5
replies
2.5k
views
Monocle causes R session to crash
software error
monocle
updated 6.8 years ago by
kevin.rue
▴ 350 • written 8.5 years ago by
galib36
▴ 10
0
votes
4
replies
1.7k
views
segfault for pairwiseAlignment
sequencing
software error
alignment
updated 9.6 years ago by
Kasper Daniel Hansen
★ 6.5k • written 9.6 years ago by
Taub, Margaret
▴ 10
0
votes
4
replies
1.2k
views
Is there support for tag type 'B' in Rsamtools?
rsamtools
software error
8.6 years ago
obanerjee
• 0
3
votes
2
replies
1.8k
views
Problem with TxDb.Mmusculus.UCSC.mm9.knownGene
software error
txdb.mmusculus.ucsc.mm9.knowngene
genomicfeatures
updated 9.3 years ago by
Hervé Pagès
16k • written 9.3 years ago by
nathan.harmston
• 0
0
votes
5
replies
7.4k
views
Help required to install bioconductor in ubuntu
software error
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
rsarvotham
• 0
3
votes
6
replies
1.8k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 8.5 years ago by
kevin.rue
▴ 350 • written 8.5 years ago by
kcamnairb
▴ 10
1
vote
9
replies
3.1k
views
Problem with ggcyto/flowWorkspace from GitHub
software error
flowworkspace
opencyto
8.3 years ago
anders.tondell
▴ 30
0
votes
2
replies
1.5k
views
Rsamtools installation error on R-3.2.0
software error
9.4 years ago
mviterson
▴ 10
0
votes
2
replies
740
views
GenomicRanges windows binary link broken
software error
8.7 years ago
shannon.dillon
• 0
1
vote
6
replies
3.2k
views
DEP package: Problems installing on macOS
software error
DEP
proteomics
updated 3.8 years ago by
Laurent Gatto
1.6k • written 3.8 years ago by
jp
• 0
1
vote
4
replies
1.3k
views
[BUG report] rtracklayer cannot handle whitespaces in file names
software error
rtracklayer
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
balwierz
▴ 40
0
votes
2
replies
1.2k
views
Error when running goseq (error in makespline)
software error
updated 9.1 years ago by
Gordon Smyth
50k • written 9.1 years ago by
suzy.stiegelmeyer@syngenta.com
▴ 40
1
vote
7
replies
3.7k
views
Problem installing BSgenome.Hsapiens.UCSC.hg19
software error
updated 8.6 years ago by
Arne Muller
▴ 20 • written 8.7 years ago by
mhwaldron104
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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