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0
votes
0
replies
852
views
rsbml: use local installation of SOSlib
installation problem
7.1 years ago
machne
• 0
3
votes
5
replies
2.0k
views
News:
sorted the results of function dba.report in DiffBind R package
diffbind
News
updated 7.1 years ago by
Rory Stark
★ 5.2k • written 7.1 years ago by
bioqianyang
• 0
0
votes
0
replies
1.1k
views
SomaticSignatures package: how can I get probability of certain mutation type within a signature?
somaticsignatures
7.1 years ago
spr
▴ 10
0
votes
2
replies
2.2k
views
Rgraphviz installation from source on Linux (Fedora 28) w BioC 3.8 -- failure
package installation
compilation error
r package problem
shared libraries
loading error
7.1 years ago
Martin Maechler
▴ 330
5
votes
8
replies
11k
views
Non overlapping granges (or opposite of subsetByOverlaps)
granges
genomicranges
iranges
subsetByOverlaps
updated 3.9 years ago by
b.simpson
• 0 • written 10.3 years ago by
vinod.acear
▴ 50
2
votes
4
replies
2.0k
views
edgeR. Known cancer genes are not differentially expressed?
edger
tcga
updated 7.1 years ago by
Aaron Lun
★ 29k • written 7.1 years ago by
rina
▴ 30
0
votes
2
replies
4.0k
views
Problem installing scater
scater
R
biocmanager
bioconductor
updated 7.1 years ago by
Aaron Lun
★ 29k • written 7.1 years ago by
hfberg
• 0
0
votes
1
reply
997
views
When should I use betaprior=T
deseq2
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
andrebolerbarros
▴ 20
0
votes
0
replies
1.5k
views
GOSemSim - slow for BP terms
gosemsim
go enrichment
go semantic similarity
7.1 years ago
nooshin
▴ 300
0
votes
1
reply
1.2k
views
DGE Analysis between 3 conditions
deseq2
rnaseq
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
evocanres
• 0
3
votes
0
replies
1.2k
views
News:
Registration for BioC2019 in NYC now open
conference
conference registration
News
7.1 years ago
Levi Waldron
★ 1.1k
2
votes
4
replies
2.6k
views
make TxDb from list of genes
R
maketxdbfrombiomart
maketxdbfromgranges
rstudio
ensembl
updated 2.7 years ago by
Shreyash
▴ 10 • written 7.1 years ago by
rtwest
• 0
1
vote
7
replies
3.2k
views
how to retrieve all attributes from biomart ?
biomart
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
Bioinformatics
▴ 30
0
votes
1
reply
3.9k
views
problem in loading Deseq2
deseq2
S4Vectors
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
roghaiyeh.safari
• 0
0
votes
3
replies
4.5k
views
Module preservation WGCNA
wgcna
wgcna package
modulepreservation
written 7.1 years ago by
bekah
▴ 40
1
vote
3
replies
1.6k
views
Two microarrays merging (different experiments) - Error with esets (inSilicoMerging package)
inSilicoMerging
microarray
affymetrix microarrays
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
Adam_M
• 0
0
votes
6
replies
1.4k
views
minfi R package for methylation analysis of infinium 450K microarray data
microarray
bioconductor
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
sinha.puja
▴ 10
0
votes
1
reply
1.6k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 7.1 years ago by
zlskidmore
▴ 30 • written 7.2 years ago by
ZihaoXing
• 0
1
vote
5
replies
2.0k
views
Can DEXSeq ouput be used directly as an input for IsoformSwitchAnalyzeR
isoformswitchanalyzer
isoform
differential isoform usage
written 7.1 years ago by
A
▴ 60
6
votes
5
replies
2.2k
views
t-statistic from various limma-approaches does not follow the theoretical distribution
limma
t-statistic
voom
voomwithqualityweights
robust regression
7.1 years ago
brynedal
▴ 40
2
votes
3
replies
2.7k
views
DESeq2 count outlier replacement from Cook's threshold
deseq2
deseq
rnaseq
outliers
count outliers
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
lefeverde
▴ 10
0
votes
1
reply
2.6k
views
WGCNA: Matching eigengenes to samples
wgcna
wgcna package
7.1 years ago
Jack
• 0
0
votes
9
replies
3.8k
views
mapping FASTQ files to single gene (fluorescent reporter)
rsubread
alignment
align
7.1 years ago
A
▴ 60
2
votes
1
reply
2.2k
views
Ensemble and Entrez disconnected?
ensembl
entrez
biomart
org.hs.eg.db
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
bettina.budeus
• 0
0
votes
3
replies
1.7k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
Jack.Hearn
• 0
0
votes
4
replies
1.4k
views
DESeq2: Analyzing just two normal+tumour pairs
deseq2
reporting tools
7.1 years ago
mmokrejs
• 0
0
votes
1
reply
2.1k
views
ReportingTools: Error using packet 1 arguments must have same length
reportingtools
7.1 years ago
mmokrejs
• 0
1
vote
12
replies
7.1k
views
Install rtracklayer with the Error undefined symbol: OPENSSL_init_ssl (system Centos7.3 R3.5.1 openssl-1.1.1)
software error
rtracklayer
bioconductor
openssl
7.1 years ago
ruan_wei_dong
• 0
2
votes
2
replies
1.5k
views
Help for Research Proposal
drug development
pathways
bioinformatics
updated 7.1 years ago by
Steve Lianoglou
★ 13k • written 7.1 years ago by
wajeehaejaz17
• 0
1
vote
2
replies
2.1k
views
ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
ggbio
ggplot2
7.1 years ago
t.fadason
▴ 10
2
votes
2
replies
1.6k
views
edgeR DE analysis: single group combined factors or GLM with interaction term
edger
glm
updated 7.1 years ago by
Aaron Lun
★ 29k • written 7.1 years ago by
jspmccain
▴ 10
1
vote
1
reply
816
views
how to retrieve gene id from topGO results
rnaseq
7.1 years ago
ycding
▴ 20
0
votes
2
replies
1.6k
views
Get normalized COUNTS Deseq2
deseq2
normalized counts
updated 7.1 years ago by
Steve Lianoglou
★ 13k • written 7.1 years ago by
anaQ
• 0
0
votes
1
reply
1.7k
views
Subset bam file in R
rsamtools
genomicalignments
genomicranges
updated 7.1 years ago by
Michael Lawrence
★ 11k • written 7.1 years ago by
ferbecneu
• 0
0
votes
6
replies
2.5k
views
large range of LFC in DESeq2
deseq2
lfc
betaprior
updated 3.2 years ago by
Michael Love
43k • written 7.1 years ago by
Mariaxi
• 0
2
votes
1
reply
1.5k
views
Bug in follow and precede
software error
genomicranges
iranges
updated 7.1 years ago by
Valerie Obenchain
★ 6.8k • written 7.1 years ago by
abc
• 0
0
votes
0
replies
1.5k
views
Job:
Bioinformatician ('CHBIO15) (m/f)
bioinformatician job
Linux
NGS
Job
7.1 years ago
l.brown
▴ 10
0
votes
3
replies
4.7k
views
Data normalization and transformation using DESeq2
deseq2
normalization
rnaseq
rlog transformation
variancestabilizingtransformation
7.1 years ago
chiara.facciotto
• 0
2
votes
2
replies
1.2k
views
DESeq results gives all genes
deseq2
design matrix
results
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
evocanres
• 0
0
votes
9
replies
4.2k
views
Featurecounts issue for counting exons: Not matching total counts mapped for specific gene
featurecounts
Rsubread
ggbio
updated 7.1 years ago by
Wei Shi
★ 3.6k • written 7.1 years ago by
A
▴ 60
3
votes
6
replies
2.9k
views
Controlling numerical covariates: differential gene expression with limma voom
limma
voom
differential gene expression
rnaseq
R
updated 7.1 years ago by
mikhael.manurung
▴ 280 • written 7.1 years ago by
Onyi Ukay
• 0
5
votes
2
replies
3.7k
views
non-integer counts for edgeR
edgeR
13.6 years ago • updated 7.1 years ago
Gordon Smyth
53k
7
votes
7
replies
9.9k
views
DESeq2 likelihood ratio test (LRT) design - 2 genotypes, 4 time points
deseq2
LRT
rnaseq
design
reduced model
updated 7.1 years ago by
evocanres
• 0 • written 8.7 years ago by
I.Castanho
▴ 50
0
votes
0
replies
1.2k
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
7.1 years ago
rbronste
▴ 60
1
vote
3
replies
960
views
DeSeq2 with extremely variable samples
deseq2
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
Helene
• 0
0
votes
1
reply
1.6k
views
DESeq2 PCA plotting
deseq2
michael love
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
sam.far.7
• 0
0
votes
1
reply
1.3k
views
DESeq2 then fdrtool
deseq2
fdrtool
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
bioinfo
• 0
0
votes
3
replies
1.4k
views
collapseReplicates changes order of factors
deseq2
bug
7.1 years ago
António Miguel de Jesus Domingues
▴ 510
0
votes
3
replies
3.3k
views
How can I read in BEAST nexus tree with treeio and get all node values
treeio
beast
nexus
ips
OutbreakTools
7.1 years ago
sknu003
• 0
0
votes
2
replies
4.3k
views
[clusterprofiler] Transformation from ENSEMBL ID to entrez ID or Symbol got reduced number of genes
clusterprofiler
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
tenger929
• 0
46,710 results • Page
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