Showing : R • reset
0
votes
1
reply
1.0k
views
write a for loop for searching TF with TFBSTools
TFBSTools R forloop
updated 3.9 years ago by • 0 • written 3.9 years ago by • 0
3
votes
4
replies
3.6k
views
STRINGdb: Error in download.file(urlStr, temp)
STRINGdb R
updated 3.7 years ago by ▴ 110 • written 3.9 years ago by ▴ 10
2
votes
5
replies
2.0k
views
DESeq2: error while ploting figure
R DESeq2
updated 3.9 years ago by 43k • written 4.0 years ago by • 0
1
vote
12
replies
4.3k
views
Is there a need or general principle/rule to assess whether the data types/distribution etc is suitable for limma R package to derive differential fe…
limma highthroughputassays R
updated 20 months ago by • 0 • written 4.0 years ago by ▴ 380
0
votes
2
replies
1.3k
views
Error in TFBSTools at SitesetList
error TFBSTools R
4.0 years ago • updated 3.9 years ago HELEN • 0
0
votes
0
replies
931
views
TFBSTools- analysis for trascriprion factors
TFBSTools RStudio R
4.0 years ago HELEN • 0
0
votes
0
replies
1.1k
views
Problem with Plots or Graphics Device in the RStudio
NullDevice plot R
4.0 years ago Abdou-samad • 0
0
votes
1
reply
2.9k
views
BiocManager::install("DNAcopy") failed to install in r
DNAcopy R
updated 4.0 years ago by ★ 6.6k • written 4.0 years ago by • 0
0
votes
2
replies
2.0k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
4.0 years ago Adarsh • 0
2
votes
2
replies
9.0k
views
Deseq2 and log2foldchange cutoffs- How to get differentially expressed genes?
DifferentialExpression GeneExpression DESeq2 R
updated 4.0 years ago by ★ 5.0k • written 4.0 years ago by ▴ 10
0
votes
0
replies
806
views
How to find genomic position
circRNAprofiler R
4.0 years ago suxxa ▴ 20
0
votes
0
replies
1.2k
views
WGCNA error during network construction
WGCNA Network R
4.0 years ago gitanjali • 0
4
votes
6
replies
2.6k
views
Interpretation of DESeq2 results with 3 factorial design with interaction terms.
r DESeq DESeq2
4.0 years ago s-rhussien • 0
2
votes
2
replies
2.8k
views
Correct way to make multiple comparisons on DESeq2?
DESeq DESeq2 R
4.1 years ago jbnrodriguez ▴ 10
3
votes
4
replies
2.0k
views
DiffBind (Error in if (DBA$config$parallelPackage))
parallel R DiffBind
updated 3.8 years ago by ★ 5.2k • written 4.1 years ago by • 0
0
votes
4
replies
19k
views
hclust(d, method = method) : NA/NaN/Inf in foreign function call (arg 10)
R pheatmap xcms
updated 3.1 years ago by 68k • written 4.1 years ago by • 0
0
votes
11
replies
4.8k
views
Remove NaN from a list or replace NaN with a value.
R meta-analysis
updated 4.2 years ago by • 0 • written 6.9 years ago by ▴ 10
0
votes
0
replies
1.3k
views
How to assign custom colour codes for Multiple sequence alignment (MSA)?
Phylogenetics genomes R MultipleSequenceAlignment Bioconductor
4.2 years ago • updated 4.1 years ago K. • 0
0
votes
0
replies
1.8k
views
EnrichGO
R enrichplot
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by • 0
0
votes
1
reply
1.2k
views
python and R
snpeff python tophat r RNAseq123
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by • 0
2
votes
6
replies
5.9k
views
How can I use geom_label_repel with EnhancedVolcano?
ggrepel RNASeq R EnhancedVolcano
4.2 years ago Loren ▴ 10
1
vote
3
replies
2.4k
views
Using block and design together in Diffbind 3.0?
DiffBind R ATACSeq
updated 4.2 years ago by ▴ 80 • written 4.2 years ago by • 0
0
votes
2
replies
1.2k
views
Help with Limma design matrix
limma R
4.2 years ago lintek08 • 0
1
vote
7
replies
3.3k
views
How to get annotations for all genes that overlap a region with annotatePeak
txdb R annotatation
4.3 years ago pegah.taklifi ▴ 30
0
votes
1
reply
1.6k
views
Re-normalize microarray dataset in R
microarray quantile expression R Normalization
updated 4.2 years ago by ▴ 90 • written 4.3 years ago by ▴ 10
0
votes
3
replies
1.3k
views
How to write a script for identifying associate gene id
bash r bingo
4.3 years ago • updated 2.9 years ago abhisek001 • 0
0
votes
0
replies
1.4k
views
R: STRINGdb, from get_enrichment() function how to get background gene list that are related to pathways?
R STRINGdb
4.3 years ago choijamts • 0
1
vote
5
replies
3.1k
views
Error in stattest function
R rnaseq Ballgown
updated 4.4 years ago by • 0 • written 7.7 years ago by • 0
0
votes
1
reply
1.2k
views
Multi-factor Analysis in DeSEQ2
tximport R tximportData RNASeq DESeq2
updated 4.4 years ago by 43k • written 4.4 years ago by • 0
1
vote
4
replies
1.5k
views
Need help in running GO analysis
RNASeq R
4.4 years ago Rishav ▴ 20
0
votes
0
replies
613
views
Need help in understanding MSstatsTMT package
R
4.4 years ago Rishav ▴ 20
0
votes
1
reply
12k
views
"No genes can be mapped...." using enrichGO in clusterProfiler
R TAIR clusterProfiler enrichGO Arabidopsis
updated 4.4 years ago by ★ 4.1k • written 4.4 years ago by • 0
0
votes
3
replies
2.7k
views
Error installing Deseq2
DESeq2 R
4.4 years ago GA ▴ 10
2
votes
3
replies
2.6k
views
Compute fgsea with my own database with R version 4.0.2
R fgsea
updated 4.4 years ago by ▴ 280 • written 4.4 years ago by • 0
4
votes
8
replies
5.4k
views
Is there a different way to generate a tree for phyloseq object
r dada2 Bioconductor
updated 4.4 years ago by ★ 1.1k • written 4.4 years ago by ▴ 10
2
votes
2
replies
1.3k
views
How to overcome issue linked to loading big R object
minfi R methylation
4.4 years ago Federica ▴ 10
4
votes
2
replies
1.7k
views
Error Loading "org.Dm.eg.db" package
r org.Dm.eg.db
updated 4.5 years ago by ▴ 80 • written 4.5 years ago by ▴ 20
0
votes
2
replies
1.5k
views
I want to use global test.
gene r clst rpy globaltest
4.5 years ago Kim • 0
1
vote
7
replies
4.7k
views
Error with hclust
dendrogram hclust textanalysis R RStudio
4.5 years ago Abby ▴ 10
0
votes
5
replies
7.3k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R Pathways pheatmap limma
written 4.5 years ago by ▴ 10
0
votes
0
replies
1.5k
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
4.6 years ago • updated 4.4 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.2k
views
Limma design multi-level experiment with 3 time points
R proteomics limma
4.6 years ago ellen2270 • 0
1
vote
4
replies
2.2k
views
Failing to install DEP package. Some strange error.
R Bioconductor Install DEP
4.6 years ago tpm • 0
0
votes
1
reply
3.5k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 10
1
vote
1
reply
2.8k
views
plotSex error message
minfiData plotsex minfi minfiDataEPIC r
updated 4.6 years ago by • 0 • written 4.6 years ago by • 0
3
votes
4
replies
3.7k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error mac DESeq2 GenomeInfoDb R
4.8 years ago • updated 4.7 years ago Dan ▴ 20
1
vote
2
replies
1.6k
views
Incomplete GWAS Catalog Data from makeCurrentGwascat()
gwascat r
4.7 years ago anailis • 0
0
votes
2
replies
1.4k
views
Add ticks to scale_x_flowjo_biexp()?
R CytoML ggycto
updated 4.8 years ago by ★ 1.3k • written 4.8 years ago by • 0
1
vote
3
replies
1.4k
views
Troubles implementing LIMMA for paired samples (before/after treatment) comparaisons
GeneExpression R limma MultipleComparison
updated 4.9 years ago by 68k • written 4.9 years ago by • 0
0
votes
5
replies
2.4k
views
Program not properly installed/program not accessible by system
R decipher
updated 4.6 years ago by ▴ 150 • written 5.5 years ago by • 0
1,163 results • Page 4 of 24
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards • All
Popular Question to Michael Love 43k
Popular Question to Peter • 0
Popular Question to Travis • 0
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Locations • All
United States, 1 hour ago
United States, 4 hours ago
The city by the bay, 5 hours ago
Hong Kong, 8 hours ago
WEHI, Melbourne, Australia, 8 hours ago
Traffic: 1837 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6