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8.0 years ago johnnytam100 • 0
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index of probes in Illumina Infinium MethylationEPIC BeadChip
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8.0 years ago mcarmel • 0
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Could I search a list of keywords on google scholar or other journal databases?
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how to get intron with ensembldb. package?
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Status 1 error when using msaPrettyPrint() to make pdfs with MsaAAMultipleAlignment
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News: List of Deprecated Packages for Bioc3.7
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Diffbind: How to compare the DBs called with and without a blocking factor
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object 'feaMeasurements' not found for MSstats
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updated 8.0 years ago by • 0 • written 8.1 years ago by ▴ 10
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Error in .Primitive("c")(<S4 object of class "IRanges">) : could not find symbol "recursive" in environment of the generic function running msa
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updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by • 0
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Error code using ChAMP/Bioconductor, unable to load data from EPIC methylation array
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8.0 years ago csappleby-mallinder1 • 0
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GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
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8.0 years ago Caroline Grisbach Meissner ▴ 10
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8.0 years ago rbronste ▴ 60
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DESeq2 - How to study time course experiment taking subject variability into account?
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8.0 years ago Bogdan ▴ 670
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8.0 years ago ximena.garate • 0
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Is it reasonable to use rlog difference to reflect differential expression of a gene across samples, and rlog value to reflect the expression level
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DESeq2 - Design for TCGA unpaired RNAseq data
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Comment: Converting Probe IDs to HGNC symbols by Manav ▴ 10
ah thank u so much
Comment: Guitar R package requires update due to dependency GenomicFeatures by Sean Davis 21k
A great way to communicate such a nice troubleshooting and bug fix hint is to file an issue in github: https://github.com/lzcyzm/Guitar/iss…
Answer: Converting Probe IDs to HGNC symbols by Sean Davis 21k
The brainarray annotations are very confusing, as the IDs in the fData look like affymetrix probe IDs. To clarify, the brainarray project m…
Comment: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k
If you have fake replicates, then I think my code answers your question about how to run the edgeR time-course analysis. Regarding tutoria…
Comment: How to do differential expresion across time serise with edgeR? by petergrahamclark ▴ 10
The use case is kinetic model parameterisation. I'm actually a systems biologist not a bioinformatician. (which is why I'm struggling here)…
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Answer: Converting Probe IDs to HGNC symbols
Converting Probe IDs to HGNC symbols
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