Showing : Illumina • reset
1
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4
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442
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EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
11 weeks ago mikat • 0
1
vote
1
reply
938
views
PCA input data from DRAGEN RNA pipeline
illumina PCAtools PCA
updated 17 months ago by ★ 3.9k • written 17 months ago by • 0
0
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0
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901
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Annotation Illumina Infinium Mouse Methylation
Illumina minfi IlluminaHumanMethylationEPICmanifest
2.0 years ago octaviompa • 0
0
votes
2
replies
870
views
Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
3.2 years ago sissialva21 • 0
2
votes
4
replies
1.6k
views
read.idat function misleading error when reading compressed files
idat illumina limma read.idat
updated 3.3 years ago by 50k • written 3.4 years ago by • 0
1
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3
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1.4k
views
Skewed beta-distribution from Methylation EPIC array data
ChAMP EPIC Illumina Methylation
4.2 years ago erwin.tomasich ▴ 10
0
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7
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2.0k
views
Annotation of probes from Affymetrix and Illumina platforms in MACQ project ?
Affymetrix Illumina probes microarray annotation package
updated 5.0 years ago by ★ 3.9k • written 5.0 years ago by • 0
1
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2
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1.4k
views
Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 5.4 years ago by ★ 1.3k • written 5.4 years ago by • 0
1
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4
replies
1.8k
views
Trouble loading 'lumi' package
lumi illumina hdf5array
updated 5.7 years ago by 65k • written 5.7 years ago by ▴ 30
2
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5
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2.3k
views
Errors in Processing GSE36411_non-normalized.txt file of Illumina data using lumi Package and limma package
limma lumi illumina gene expression data
updated 2.4 years ago by ▴ 10 • written 5.8 years ago by • 0
2
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4
replies
1.3k
views
The error when using beadarry and limma packages for analysing illumina chip
limma beadarray illumina
updated 5.9 years ago by 50k • written 5.9 years ago by ▴ 10
1
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1
reply
1.7k
views
How to convert Illumina HumanMethylation27 BeadChip ID's to gene names?
gene names methylation illumina convertids
updated 5.9 years ago by 65k • written 5.9 years ago by ▴ 10
1
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1
reply
1.4k
views
Illumina Infinium Global Screening Array (GSA) v1.0 for CRLMM
crlmm gsa microarray illumina
written 6.0 years ago by • 0
1
vote
5
replies
1.2k
views
Comparing RNA-Seq expression data from different sequencers (HiSeq3000 and NovaSeq6000) - are there methods for batch effect corrections?
deseq2 rna-seq illumina batch effect
updated 6.0 years ago by 41k • written 6.0 years ago by ▴ 40
0
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2
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1.1k
views
BAM file into R from Illumina
bam file STAR Illumina
updated 6.0 years ago by ▴ 10 • written 6.0 years ago by • 0
0
votes
3
replies
1.9k
views
Error and warning message when reading the ballgown object
software error illumina DEG ballgown tuxedo
updated 6.1 years ago by 65k • written 6.1 years ago by • 0
1
vote
1
reply
1.4k
views
RNA-seq for DGE
stringtie illumina hisat2 ballgown
updated 6.4 years ago by ▴ 120 • written 6.4 years ago by • 0
0
votes
3
replies
1.5k
views
How can I pre-process illumina raw file
illumina microarray
updated 6.7 years ago by 65k • written 6.7 years ago by ▴ 260
1
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3
replies
1.4k
views
Minfi returning incorrect beta values
minfi illumina illumina450k methylation R
6.8 years ago ezrabekele17 • 0
0
votes
0
replies
961
views
minfi error with dmpfinder
methylation illumina
6.9 years ago indranipoddar • 0
0
votes
2
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1.9k
views
Illumina methylationEPIC demo data in IDAT format?
methylation illumina EPIC methylationepic idat
updated 7.0 years ago by ★ 3.9k • written 7.0 years ago by • 0
0
votes
0
replies
2.4k
views
lumiR error Error in gregexpr("\t", dataLine1)[[1]] : subscript out of bounds
lumi illumina normalization beadarray
7.0 years ago hkarakurt ▴ 20
2
votes
1
reply
1.4k
views
Differential Expression Analysis
differential gene expression microarray lumi illumina
updated 7.1 years ago by 65k • written 7.1 years ago by • 0
2
votes
3
replies
2.5k
views
Normalization of Illumina Microarray Data
illumina microarray normalization
updated 7.1 years ago by 50k • written 7.1 years ago by • 0
0
votes
3
replies
1.6k
views
MINFI missing samples in qcreports and densityplots
minfi illumina methylationEPIC densityplot
7.3 years ago annabelle.congras ▴ 10
0
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1
reply
1.3k
views
Problems in using lumi for importing illumina raw data
beadarray lumi normalization microarray illumina
updated 7.3 years ago by 50k • written 7.3 years ago by ▴ 110
0
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0
replies
1.5k
views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
7.7 years ago rasii • 0
2
votes
3
replies
1.6k
views
lumiR [Illumina] error from non-normalized data
illumina
updated 7.7 years ago by 50k • written 7.7 years ago by ▴ 40
0
votes
4
replies
1.9k
views
Aclust package: IlluminaHumanMethylation450kCHR37 not found
illuminahumanmethylation450k.db aclust methylation annotation illumina
updated 7.6 years ago by • 0 • written 7.7 years ago by • 0
0
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0
replies
1.1k
views
Illumina Genotyping in parallel raise an error
crlmm snp illumina
7.8 years ago nadne ▴ 10
6
votes
9
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1.5k
views
Interpretation of DE analysis results of an Illumina microarray dataset, and possible batch effect size problem
limma illumina microarray multifactorial design batch effect
updated 7.9 years ago by 50k • written 7.9 years ago by ▴ 80
0
votes
1
reply
2.1k
views
Question about neqc and GEO illumina files
neqc illumina geo limma
updated 7.9 years ago by 50k • written 7.9 years ago by ▴ 30
0
votes
2
replies
1.1k
views
permutation with plink
illumina plink permutation
updated 7.9 years ago by 65k • written 7.9 years ago by • 0
0
votes
0
replies
992
views
Lumi Control Data
lumi illumina microarray
8.0 years ago m.a.bentley • 0
1
vote
14
replies
3.7k
views
GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and workflow
GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina
updated 8.0 years ago by ▴ 870 • written 8.0 years ago by • 0
0
votes
1
reply
1.1k
views
Lumi error in importMethylIDAT
lumi methylation illumina
updated 8.0 years ago by 65k • written 8.0 years ago by • 0
0
votes
1
reply
1.5k
views
Error in Matrix
minfi methylation EPIC microarray illumina
updated 8.0 years ago by ★ 6.5k • written 8.0 years ago by • 0
3
votes
15
replies
4.4k
views
Installing MethylationEPIC minifest and annotation
minfi methylation illuminahumanmethylationepicmanifest illumina
8.1 years ago rasii • 0
0
votes
4
replies
1.6k
views
minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 8.1 years ago by ★ 6.5k • written 8.1 years ago by ▴ 40
0
votes
3
replies
2.1k
views
neqc normalization results in bimodal histogram of expression values
neqc limma microarray illumina
updated 8.2 years ago by 50k • written 8.2 years ago by ▴ 110
0
votes
2
replies
1.3k
views
clustering analysis of illumina microarray gene expression data
clustering illumina microarray
8.2 years ago kritikamish99 ▴ 10
4
votes
8
replies
10k
views
how to use idat file for analyses in bioconductor
microarray illumina idat
updated 8.2 years ago by 50k • written 8.2 years ago by ▴ 10
0
votes
0
replies
1.4k
views
How can I do paired test on my Illumina 450k idat files with ChAMP package?
Illumina 450k ChAMP paired test
8.2 years ago walter_teng • 0
7
votes
4
replies
1.6k
views
very high adjusted P-vals using Illumina data from GEO
limma p values microarray illumina
updated 8.3 years ago by 65k • written 8.3 years ago by ▴ 20
0
votes
0
replies
1.3k
views
Repetitive motifs on Illumina 450k derived sequences
illumina 450k motifs meme
8.3 years ago Gustavo Fernández Bayón ▴ 440
0
votes
0
replies
921
views
Problems using the savR package
savR illumina
8.3 years ago merella.stefania • 0
2
votes
1
reply
1.5k
views
Normalization and background correction issues for specific Illumina data sets using limma R package
illumina bioconductor limma microarray normalization
updated 8.5 years ago by 50k • written 8.5 years ago by ▴ 80
1
vote
1
reply
1.3k
views
Error genotyping with CRLMM
crlmm copynumber illumina
updated 8.5 years ago by ▴ 370 • written 8.5 years ago by • 0
1
vote
6
replies
2.1k
views
Copy number analysis from Illumina 550K chip
illumina copynumber crlmm
8.5 years ago stuti.agrawal • 0
0
votes
4
replies
2.4k
views
Illumina Sentrix HumanRef-8 Expression BeadChip annotation file
illumina annotation
updated 8.5 years ago by ★ 6.5k • written 8.5 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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