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bioconductor
•
reset
3
votes
18
replies
3.0k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 25 days ago
shepherl
3.9k
0
votes
22
replies
3.1k
views
'x' has "out of limits" views ,Issue with the file size!! Compareequence function is not working
compilation error
filesize
bioconductor
6.7 years ago
susobhanbaidya
• 0
3
votes
6
replies
4.5k
views
Analyzing data without replicates using DiffBind
diffbind
bioconductor
differential binding analysis
without replicate
chipseq
6.5 years ago
Hesh
▴ 10
2
votes
20
replies
5.4k
views
Important r packages not available for R version 3.1.1
exonmap
exon array analysis
bioconductor
9.2 years ago
svlachavas
▴ 830
1
vote
22
replies
4.7k
views
problem with makeOrgPackageFromNCBI when making an annotation package
bioconductor
R
annotationforge
updated 7.4 years ago by
theobroma22
▴ 10 • written 7.8 years ago by
wssdandan2009
• 0
8
votes
7
replies
4.4k
views
How can I get all installed Bioconductor packages?
bioconductor
updated 5.9 years ago by
melissadayhill
• 0 • written 5.9 years ago by
ishenweiyan
• 0
6
votes
10
replies
4.8k
views
defining a function for multiple paired t.test in many rows of a microarray dataset
microarray
r
t.test
bioconductor
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
svlachavas
▴ 830
0
votes
6
replies
1.5k
views
GenomeInfoDbData not available for Mac
bioconductor
GenomeInfoDbData
5.8 years ago
svetlana.gorokhova
• 0
3
votes
14
replies
3.7k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart
error
ensembl
bioconductor
ensembl mart
7.0 years ago • updated 6.9 years ago
daniel.carbajo
• 0
1
vote
3
replies
2.5k
views
XCMS2 on MSMS data
xcms
metabolomics
massspectrometry
lipidomics
bioconductor
8.3 years ago
Titan
• 0
1
vote
5
replies
2.3k
views
AnnotationHub has no (not all) data
annotation
bioconductor
updated 8.7 years ago by
barashe
▴ 10 • written 9.0 years ago by
Mario Dejung
• 0
5
votes
9
replies
3.1k
views
Merge different datasets regarding a common number of DE genes in R
bioconductor
expresiondataset
affymetrixchip
differential gene expression
9.2 years ago
svlachavas
▴ 830
4
votes
10
replies
1.8k
views
Archives prior to 3.15 gone
archive
bioconductor
updated 6 months ago by
shepherl
3.9k • written 19 months ago by
Florian Finkernagel
▴ 30
5
votes
22
replies
5.5k
views
sqliteSendQuery error in AnnotationForge bioconductor package
bioconductor
annotationforge
annotationdbi
annotation
r
updated 7.8 years ago by
Axel Klenk
★ 1.0k • written 9.2 years ago by
Stephen H
• 0
0
votes
4
replies
751
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor
Transcriptomics
DifferentialExpression
DESeq2
11 months ago
sreeshmaraj72
• 0
1
vote
6
replies
16k
views
install new package from bioconductor
software error
bioconductor
updated 8.5 years ago by
Julie Zhu
★ 4.3k • written 8.5 years ago by
Tiphaine Martin
▴ 40
0
votes
4
replies
1.2k
views
GO annotation and gene set testing for plant dataset
go
edger
annotation
topgo
bioconductor
8.0 years ago • updated 7.9 years ago
myprogramming2016
• 0
0
votes
3
replies
2.5k
views
warning: example doesn't exist; while trying to build a package
bioconductor
package development
R
roxygen2
warning
6.5 years ago
clarisbaby
• 0
7
votes
6
replies
1.8k
views
How to obtain summary statistics for all Bioc releases
bioconductor
release
6.0 years ago
Robert Ivanek
▴ 730
0
votes
15
replies
2.0k
views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor
iranges
s4vectors
xvector
r 3.3.2
updated 5.8 years ago by
becker.gabriel
▴ 10 • written 5.8 years ago by
chokoiboko
• 0
3
votes
6
replies
6.7k
views
Unable to install "limma" package on RStudio
Bioconductor
limma
limmaGUI
2.2 years ago
jaydengitt
• 0
1
vote
13
replies
11k
views
unable to access index for repository
Bioconductor
ConsensusClusterPlus
updated 9 months ago by
Mehdi
• 0 • written 17 months ago by
k.wickstrom
• 0
1
vote
3
replies
3.1k
views
Reactome pathway analysis using ReactomePA
reactomepa
R
bioconductor
ReactomePA
updated 8.6 years ago by
kmezhoud
▴ 10 • written 8.6 years ago by
Deepak Tanwar
▴ 10
0
votes
6
replies
1.8k
views
Bam file analysis fro beginner
bioconductor
6.9 years ago
Morris
▴ 10
3
votes
3
replies
1.8k
views
Comparing two RNAseq experiments using summarizeOverlaps
summarizeoverlaps
R
bioconductor
rnaseq
rna-seq
updated 7.2 years ago by
Hervé Pagès
16k • written 7.2 years ago by
Walter F. Baumann
▴ 10
0
votes
11
replies
3.7k
views
Missing data after BiomaRt query
biomart
bioconductor
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
elodie.chapeaublanc
• 0
1
vote
4
replies
1.4k
views
M3D package in Bioconductor 3.4
bioconductor
methylation
updated 7.4 years ago by
Dimitris Polychronopoulos
▴ 80 • written 7.4 years ago by
francescacairoli
• 0
2
votes
10
replies
3.3k
views
ChIPpeakAnno, MACS format annotation
bioconductor
ChIPpeakAnno
updated 5.3 years ago by
Julie Zhu
★ 4.3k • written 7.1 years ago by
Khademul Islam
▴ 30
7
votes
4
replies
1.7k
views
News:
Bioconductor 3.7 is released
bioconductor
release
News
written 6.0 years ago by
Valerie Obenchain
★ 6.8k
1
vote
5
replies
1.6k
views
Making package compatible with old version of R/Bioconductor
bioconductor
R
software error
biocinstaller
7.9 years ago
gabriel.hoffman
▴ 110
0
votes
5
replies
2.7k
views
Gene Symbol with Pathview
pathview
bioconductor
kegg
visualization
updated 8.6 years ago by
Luo Weijun
★ 1.6k • written 8.6 years ago by
abhinavbn
• 0
1
vote
9
replies
1.6k
views
IONiseR error when using the readFast5Summary function on nanopore data
ioniser
software error
bioconductor
7.6 years ago
mv340788
• 0
1
vote
8
replies
8.8k
views
"Subscript out of bounds" erorr during microarray analysis with Limma
oligo
limma
bioconductor
affymetrix microarrays
8.8 years ago
Claudia
▴ 10
4
votes
9
replies
3.3k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA
similarity
correlation
bioconductor
rnaseq
updated 7.3 years ago by
Peter Langfelder
★ 3.0k • written 7.3 years ago by
jol.espinoz
▴ 40
1
vote
3
replies
2.3k
views
summarizeOverlaps bplapply error
genomicalignments
genomicranges
bioconductor
rnaseq
updated 8.8 years ago by
eraslan
• 0 • written 9.3 years ago by
cidster12
• 0
0
votes
2
replies
1.6k
views
How to launch a preconfigured Bioconductor AMI session using the free tier with RStudio Server?
bioconductor
amazon
ami
cloud
updated 7.8 years ago by
shepherl
3.9k • written 7.8 years ago by
kdkorthauer
• 0
1
vote
3
replies
1.1k
views
Request: Annotate DESCRIPTION of 'extra' packages with 'biocViews' or other identifying tag
bioconductor
extra-packages
9.0 years ago
Kevin Ushey
▴ 130
2
votes
5
replies
1.6k
views
Download the stats of Bioconductor
bioconductor
stats
9.3 years ago
Lluís Revilla Sancho
▴ 730
0
votes
3
replies
3.8k
views
Is it possible to install previous versions of the packages instead of the newest ones?
bioconductor
7.8 years ago
lech
• 0
1
vote
4
replies
1.9k
views
Selection of appropriate gene filtering method for discovering statistically significant genes for Affymetrix arrays
bioconductor
differential gene expression
independent filtering
9.3 years ago
svlachavas
▴ 830
4
votes
4
replies
2.6k
views
Non-specific filtering methodogies for ExpressionSet in R/Bioconductor
genefilter
R
bioconductor
differential gene expression
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
svlachavas
▴ 830
6
votes
18
replies
3.3k
views
biomaRt - getBM - biomart= ENSEMBL_MART_FUNCGEN !!! NOT WORKING!!!
bioconductor
biomart
problem with connection
updated 7.9 years ago by
Dan Staines
▴ 70 • written 7.9 years ago by
juan-pablo.cerapio-arroyo
▴ 10
1
vote
4
replies
2.1k
views
How to install old GenomicRanges 1.14.4 package ?
bioconductor
R
cancer
probe
deseq2
updated 7.9 years ago by
derbecker
▴ 10 • written 8.0 years ago by
winter_li
• 0
12
votes
9
replies
8.0k
views
Appropriate use of the function treat of the limma package
limma
treat
microarray
bioconductor
9.2 years ago
svlachavas
▴ 830
22
votes
4
replies
9.9k
views
Correct assumptions of using limma moderated t-test
limma
statistical inference
variance test
bioconductor
updated 9.0 years ago by
Gordon Smyth
50k • written 9.0 years ago by
svlachavas
▴ 830
0
votes
2
replies
991
views
Why are these two clustering patterns different?
bioconductor
updated 7.9 years ago by
Aedin Culhane
▴ 510 • written 7.9 years ago by
chris86
▴ 420
3
votes
5
replies
4.3k
views
DESeq2 3-fatcor design and different interaction terms
deseq2
bioconductor
rnaseq
multifactorial design
interactions
updated 7.8 years ago by
Michael Love
42k • written 7.8 years ago by
c.evang
▴ 10
3
votes
5
replies
7.3k
views
WGCNA HELP - Error: REAL() can only be applied to a 'numeric', not a 'integer'
wgcna
rnaseq
R
bioconductor
updated 8.3 years ago by
Peter Langfelder
★ 3.0k • written 8.3 years ago by
sm15766
▴ 30
1
vote
2
replies
6.4k
views
HTseq in bioconductor
rnaseq
bioconductor
8.3 years ago
KB
▴ 50
1
vote
4
replies
2.5k
views
Possible transcription factor binding site enrichment analysis in R/Bioconductor and alternative suggestions
transcription factor binding site enrichment analysis
bioconductor
promoter analysis
microarray
updated 7.4 years ago by
Steve Lianoglou
★ 13k • written 9.0 years ago by
svlachavas
▴ 830
50 results • Page
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Answer: Gene set enrichment analysis
by
Guido Hooiveld
★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
zzrammal
• 0
thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
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[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
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sajadahmad41454
• 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: minfi latest update for EPIC V2 chip
A: AIC-like measure for DESeq2
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