Showing : package installation • reset
0
votes
5
replies
24k
views
package DESeq2 installation with R.
deseq2 R package installation
updated 2.9 years ago by 41k • written 6.1 years ago by • 0
7
votes
5
replies
16k
views
How to get rid of "Update all/some/none? [a/s/n]:"
rgl mgcv nlme package installation
updated 8.2 years ago by 50k • written 8.2 years ago by ▴ 40
7
votes
11
replies
16k
views
Error: package or namespace load failed for...
package installation flowviz flowcore rcpp flow cytometry
updated 6.9 years ago by 25k • written 6.9 years ago by ▴ 50
14
votes
21
replies
11k
views
Installing ShortRead - error: zlib not found even with zlib in LD_LIBRARY_PATH
package installation shortread dependency
updated 4.9 years ago by ▴ 240 • written 6.0 years ago by ▴ 60
3
votes
5
replies
10k
views
Problem Installing limma package
limma software error installation package installation
updated 7.0 years ago by 50k • written 7.0 years ago by • 0
0
votes
2
replies
8.2k
views
Is there a way to specify where BiocInstaller will install packages similar to the "lib=...." for install.packages?
biocinstaller custom library path installation package installation
updated 5.6 years ago by 65k • written 5.6 years ago by ▴ 20
0
votes
2
replies
6.1k
views
Unable to install any bioconductor packages
R biocinstaller bioclite package installation
6.7 years ago sebastien200109 • 0
0
votes
13
replies
6.0k
views
Package installation error
parathyroidse package installation dependencies
updated 7.9 years ago by 16k • written 7.9 years ago by • 0
2
votes
3
replies
5.2k
views
Error during EBImage installation
ebimage ggtree package installation
updated 6.9 years ago by ▴ 750 • written 6.9 years ago by ▴ 10
0
votes
2
replies
5.0k
views
An Installing error that cannot open URL
software error package installation version
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
4
votes
6
replies
4.4k
views
Cannot Install BSgenome.Hsapiens.UCSC.hg19
software error package installation
7.0 years ago alongalor ▴ 10
1
vote
1
reply
3.7k
views
edgeR reinstall failure: edgeR.rdb' is corrupt
edgeR package installation
updated 6.8 years ago by ★ 28k • written 6.8 years ago by • 0
2
votes
7
replies
3.3k
views
Bioconductor installing pakage error, R 3.4.2, Ubuntu 17.10
bioconductor biocinstaller package installation
6.5 years ago martyferr90 ▴ 20
3
votes
3
replies
3.3k
views
problem reinstalling Bioconductor package 'clusterProfiler' after updating R to 3.4.0
clusterprofiler package installation r update
updated 6.9 years ago by ▴ 10 • written 7.0 years ago by ▴ 10
1
vote
12
replies
3.2k
views
Problem in installing bioconductor
package installation
6.8 years ago nosheenfaiz09 • 0
0
votes
7
replies
3.0k
views
BiocInstaller wants version of R that is not available yet
bioconductor error biocinstaller package installation install
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
1
vote
1
reply
2.9k
views
Installation of RCurl
package installation
updated 5.5 years ago by 25k • written 5.5 years ago by ▴ 110
7
votes
9
replies
2.9k
views
Install ggbio development version
ggbio development package installation
updated 7.5 years ago by 25k • written 7.5 years ago by ▴ 10
1
vote
2
replies
2.7k
views
Corrupt Database Error When Loading qvalue() Package
qvalue library software error package installation package updates
7.4 years ago tah340 • 0
0
votes
4
replies
2.7k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 6.2 years ago by ★ 1.3k • written 6.6 years ago by ▴ 70
0
votes
1
reply
2.5k
views
TxDb.Hsapiens.UCSC.hg19.knownGen installation fail - non-zero exit status
software error package installation genomicfeatures
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
3
replies
2.4k
views
Support for devtools::install_version
package installation
5.7 years ago acekane1 • 0
2
votes
3
replies
2.4k
views
hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
readaffy frma affy package installation hgu133a
6.1 years ago Chris Mancuso • 0
0
votes
2
replies
2.4k
views
failure to install Homo.sapiens
package installation
8.2 years ago david.cherba • 0
0
votes
1
reply
2.3k
views
fail to install org.Hs.eg.db and hgu133plus2.db
annotation bioconductor installation package installation
7.7 years ago xiaoyutian212 • 0
0
votes
4
replies
2.2k
views
ChIPQC error: "non-zero exit status"
software error package installation chipqc txdb.hsapiens.ucsc.hg18.knowngene
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
5
votes
5
replies
2.2k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite package installation withr biocinstaller rhtslib
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 120
2
votes
10
replies
2.1k
views
Trouble Installing lifOver workflow
software error liftOver workflowinstall package installation
updated 7.6 years ago by 65k • written 7.6 years ago by • 0
3
votes
2
replies
2.1k
views
Trouble installing bioconductor packages: ERROR: sub-architecture 'R' is not installed
package installation mac os x
updated 6.0 years ago by 25k • written 6.0 years ago by • 0
3
votes
2
replies
2.0k
views
Rsamtools use for R version 3.4.1
rsamtools package installation samtools
updated 6.4 years ago by 65k • written 6.4 years ago by ▴ 60
0
votes
1
reply
2.0k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
1
vote
7
replies
1.9k
views
Error installing cummeRbund/Rsamtools
cummerbund rsamtools package installation compilation error
8.1 years ago rainer.rutka ▴ 10
1
vote
3
replies
1.9k
views
Bioc 3.3 Windows 10 eiR package fails to install
software error R cheminformatics package installation eiR
updated 7.9 years ago by • 0 • written 7.9 years ago by • 0
3
votes
2
replies
1.9k
views
Installation of MSA package fails
MSA package installation software error compilation error
updated 6.4 years ago by ▴ 290 • written 6.4 years ago by ▴ 10
2
votes
5
replies
1.8k
views
[XPS]Installation of xps package in macOS Sierra
xps package installation
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
0
votes
1
reply
1.8k
views
Questions regarding removal and following re-installation of a specific R package using a custom library path
package installation custom library path biocLite bioconductor
8.6 years ago svlachavas ▴ 830
2
votes
4
replies
1.8k
views
Problem installing Repitools package
package installation r package problem
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 20
0
votes
2
replies
1.7k
views
GWASTools depends on the ncdf CRAN package, but this package has been removed
package installation
8.2 years ago jeremy37 • 0
0
votes
1
reply
1.7k
views
R says include dir is empty, but it's not.
R bioconductor biocinstaller package installation
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 20
6
votes
2
replies
1.7k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by ▴ 10
1
vote
2
replies
1.7k
views
Installation problem, S4Vectors, something about "apply_hotfix73465" not found
package installation s4vectors
updated 6.5 years ago by 25k • written 6.6 years ago by • 0
0
votes
6
replies
1.7k
views
Illumina Methylation Manifest Install
Install biocinstaller package installation
6.0 years ago julieumn • 0
0
votes
1
reply
1.6k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.1 years ago by ★ 1.3k • written 6.1 years ago by • 0
1
vote
4
replies
1.6k
views
Error installing EWCE package
package installation EWCE not available (for r version 3.5.0)
updated 5.5 years ago by ★ 6.5k • written 5.5 years ago by • 0
0
votes
0
replies
1.6k
views
failed ToPASeq / igraph installation: file present, but not found
installation package installation topaseq igraph LD_LIBRARY_PATH
7.3 years ago jan.soderman • 0
0
votes
2
replies
1.6k
views
Rgraphviz installation from source on Linux (Fedora 28) w BioC 3.8 -- failure
package installation compilation error r package problem shared libraries loading error
5.4 years ago Martin Maechler ▴ 330
0
votes
1
reply
1.5k
views
Errors installing RforProteomics
Bioc package installation rforproteomics
updated 8.2 years ago by 1.6k • written 8.2 years ago by • 0
0
votes
2
replies
1.5k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation pd.hta.2.0
6.7 years ago alexander2073 • 0
0
votes
3
replies
1.5k
views
flowCore install issues
flowcore package installation compilation error
7.4 years ago zimon.toutoune • 0
4
votes
5
replies
1.5k
views
Can not install Bioconductor 3.5's GenomicRanges package via biocLite.
package installation
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 180
50 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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